PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146048.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 315aa    MW: 36623.4 Da    PI: 10.3267
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.92.5e-2016108197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++ ++d +++++  lp +f+ ++ +k+  s +++++ e+g sWev +  +k+++  yv ++GW++Fv++n L +++f++F+++g+++f  +v
  XP_009146048.1  16 FFKIFQSADLSSECMRALPYNFM-QNLSKEDFSYKMVIRAEWGSSWEVDV--SKNPRFyYVEKSGWNQFVSDNALGDNEFITFTHKGSMSF--NV 105
                     99*********************.66567789******************..****9977788**********************999999..66 PP

                     EEE CS
              B3  95 kvf 97 
                      ++
  XP_009146048.1 106 NIY 108
                     665 PP
2B3382.9e-122263051395
                     TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ++ l lp+ f eeh   + es++ t+ + e   sW+v +    + +r+v+++GW++ +++  Lk+gD ++Fkl++ +ef l  k
  XP_009146048.1 226 LKFLLLPRVFEEEHI--PGESMEYTIHHsEMKCSWNVLC--LVRENRTVFSSGWSRLAREFPLKVGDRCTFKLIKPTEFVLITK 305
                     456899****99993..5578899998846669******..888888**************************99888855544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1810112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-1911116IPR015300DNA-binding pseudobarrel domain
CDDcd100175.61E-1715108No hitNo description
PROSITE profilePS5086313.3116111IPR003340B3 DNA binding domain
SMARTSM010193.5E-2316111IPR003340B3 DNA binding domain
PfamPF023622.4E-1816108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-14212303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-17212303IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.912214308IPR003340B3 DNA binding domain
CDDcd100173.33E-9215298No hitNo description
SMARTSM010194.6E-12217307IPR003340B3 DNA binding domain
PfamPF023621.1E-10225306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGWNGRIKEE RKNLSFFKIF QSADLSSECM RALPYNFMQN LSKEDFSYKM VIRAEWGSSW  60
EVDVSKNPRF YYVEKSGWNQ FVSDNALGDN EFITFTHKGS MSFNVNIYGK NGKEIVTPRK  120
PLTATPLSGV KKEEGERSYK DVKKEEETCE SMDGVEVEET TKKAYKTSKK KKKKKSKKVV  180
THVEVGESSR GRKKKAEKLK TLKKKKIKTV KKGVPEFEIT IRKSYLKFLL LPRVFEEEHI  240
PGESMEYTIH HSEMKCSWNV LCLVRENRTV FSSGWSRLAR EFPLKVGDRC TFKLIKPTEF  300
VLITKKSRKE ITVIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174KKKKKKK
2168177KKKKKKKSKK
3169177KKKKKKSKK
4190198GRKKKAEKL
5191205RKKKAEKLKTLKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146048.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893481e-170AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146048.10.0PREDICTED: B3 domain-containing protein At3g17010-like
RefseqXP_013639997.10.0B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-113Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLM4E0920.0M4E092_BRARP; Uncharacterized protein
STRINGBra022189.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-111B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]