PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009146048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 315aa MW: 36623.4 Da PI: 10.3267 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.9 | 2.5e-20 | 16 | 108 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ ++d +++++ lp +f+ ++ +k+ s +++++ e+g sWev + +k+++ yv ++GW++Fv++n L +++f++F+++g+++f +v XP_009146048.1 16 FFKIFQSADLSSECMRALPYNFM-QNLSKEDFSYKMVIRAEWGSSWEVDV--SKNPRFyYVEKSGWNQFVSDNALGDNEFITFTHKGSMSF--NV 105 99*********************.66567789******************..****9977788**********************999999..66 PP EEE CS B3 95 kvf 97 ++ XP_009146048.1 106 NIY 108 665 PP | |||||||
2 | B3 | 38 | 2.9e-12 | 226 | 305 | 13 | 95 |
TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ l lp+ f eeh + es++ t+ + e sW+v + + +r+v+++GW++ +++ Lk+gD ++Fkl++ +ef l k XP_009146048.1 226 LKFLLLPRVFEEEHI--PGESMEYTIHHsEMKCSWNVLC--LVRENRTVFSSGWSRLAREFPLKVGDRCTFKLIKPTEFVLITK 305 456899****99993..5578899998846669******..888888**************************99888855544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-18 | 10 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-19 | 11 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.61E-17 | 15 | 108 | No hit | No description |
PROSITE profile | PS50863 | 13.31 | 16 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-23 | 16 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-18 | 16 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-14 | 212 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-17 | 212 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.912 | 214 | 308 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.33E-9 | 215 | 298 | No hit | No description |
SMART | SM01019 | 4.6E-12 | 217 | 307 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-10 | 225 | 306 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MGWNGRIKEE RKNLSFFKIF QSADLSSECM RALPYNFMQN LSKEDFSYKM VIRAEWGSSW 60 EVDVSKNPRF YYVEKSGWNQ FVSDNALGDN EFITFTHKGS MSFNVNIYGK NGKEIVTPRK 120 PLTATPLSGV KKEEGERSYK DVKKEEETCE SMDGVEVEET TKKAYKTSKK KKKKKSKKVV 180 THVEVGESSR GRKKKAEKLK TLKKKKIKTV KKGVPEFEIT IRKSYLKFLL LPRVFEEEHI 240 PGESMEYTIH HSEMKCSWNV LCLVRENRTV FSSGWSRLAR EFPLKVGDRC TFKLIKPTEF 300 VLITKKSRKE ITVIG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 174 | KKKKKKK |
2 | 168 | 177 | KKKKKKKSKK |
3 | 169 | 177 | KKKKKKSKK |
4 | 190 | 198 | GRKKKAEKL |
5 | 191 | 205 | RKKKAEKLKTLKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009146048.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189348 | 1e-170 | AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146048.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Refseq | XP_013639997.1 | 0.0 | B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 1e-113 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | M4E092 | 0.0 | M4E092_BRARP; Uncharacterized protein | ||||
STRING | Bra022189.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 1e-111 | B3 family protein |
Publications ? help Back to Top | |||
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