PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145934.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 644aa    MW: 73856.3 Da    PI: 8.781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.2e-09257301246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT+eE+  l   +++ G  +W  Ia  +g++Rt+ qc  r+q 
   XP_009145934.1 257 DPWTAEEENNLRVIIQEKGFTDWLDIAVSLGTNRTPFQCLARYQR 301
                      69*****************************************96 PP
2Myb_DNA-binding46.39.8e-15309355148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r+ WT+eEd++l  av+++G ++W t+a+ +  gR + qc +rw k l
   XP_009145934.1 309 RKEWTAEEDDQLRAAVELYGEKDWQTVANALE-GRAGTQCSNRWKKTL 355
                      789*****************************.***********9975 PP
3Myb_DNA-binding47.54.1e-15363407247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+++ +E+++l+ av+++G  +W++Iar ++ gRt  qc+++w + 
   XP_009145934.1 363 GKFSSDEEKRLKVAVTLFGAQNWHKIARFVP-GRTSTQCREKWANC 407
                      79*****************************.***********885 PP
4Myb_DNA-binding543.9e-17415459247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+W++eEd +l +a +++  g+W++Ia++++ +Rt++qc+ rw ++
   XP_009145934.1 415 GKWSKEEDAKLREAMAEHEIGNWSKIASHVP-RRTDNQCRRRWMQL 459
                      89*****************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.133154250IPR017877Myb-like domain
SMARTSM007170.1158252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-9161177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-9223262IPR009057Homeodomain-like
SuperFamilySSF466895.35E-14232300IPR009057Homeodomain-like
PROSITE profilePS512948.962251303IPR017930Myb domain
SMARTSM007174.6E-8255305IPR001005SANT/Myb domain
PfamPF002493.6E-8257301IPR001005SANT/Myb domain
CDDcd001678.79E-6258303No hitNo description
Gene3DG3DSA:1.10.10.606.1E-13263311IPR009057Homeodomain-like
SuperFamilySSF466891.65E-19288358IPR009057Homeodomain-like
PROSITE profilePS5129421.822304359IPR017930Myb domain
SMARTSM007176.1E-14308357IPR001005SANT/Myb domain
PfamPF002491.2E-12309354IPR001005SANT/Myb domain
CDDcd001677.24E-11311355No hitNo description
Gene3DG3DSA:1.10.10.601.2E-16312358IPR009057Homeodomain-like
PROSITE profilePS5129412.027360408IPR017930Myb domain
SMARTSM007171.7E-11361410IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-17363412IPR009057Homeodomain-like
PfamPF002497.6E-13363407IPR001005SANT/Myb domain
CDDcd001671.15E-9364406No hitNo description
SuperFamilySSF466893.59E-26388463IPR009057Homeodomain-like
PROSITE profilePS5129425.519409464IPR017930Myb domain
SMARTSM007174.5E-15413462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-21413459IPR009057Homeodomain-like
PfamPF002493.4E-16415459IPR001005SANT/Myb domain
CDDcd001674.85E-14416459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MILSGRKSSF LDQGKQAGES VGLHENSAIA PLDPTCQSSS FPEAAQDFVE AIRRNRAYQK  60
FLRKKLTEIE AKIEQNEKHQ KNVKIVVDFQ ASCKRITKQA LSQGKDPRLQ LISTPKCGPR  120
DSSEDNDKKI SPLTFGPSEN SCVENYRMAI KNYPVSVNRR SWSTEENENL AKGLKQQLQE  180
TLLNEAIERY SDLEGSSDDI ETINESIKNL EITPEMMRQF LPKVNWDQLA SMYVKDRSAA  240
ECEARWMSSE DPLINHDPWT AEEENNLRVI IQEKGFTDWL DIAVSLGTNR TPFQCLARYQ  300
RSLNADILRK EWTAEEDDQL RAAVELYGEK DWQTVANALE GRAGTQCSNR WKKTLHPTRT  360
RVGKFSSDEE KRLKVAVTLF GAQNWHKIAR FVPGRTSTQC REKWANCLDP NVNHGKWSKE  420
EDAKLREAMA EHEIGNWSKI ASHVPRRTDN QCRRRWMQLY PHQVPLLQEA TRLRKEAIVG  480
NFVDRESQRP ALLECKFLAL PEIPLEPEPE IVAVKKKRKA RPKKADAECE SEVSSAAKER  540
RPKRRRKGLE RCSGDVCRQE NETVCENIEN LDNGGEVRSL EWYKENQDNV KEKKQRRRRK  600
SVAETSNNST VTTDCSQVKV GVKKLTPRRK VSAVVPVENQ DAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-272254563155MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-272254563155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145934.10.0PREDICTED: myb-like protein L isoform X2
TrEMBLA0A397ZEI10.0A0A397ZEI1_BRACM; Uncharacterized protein
STRINGBra022280.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.20.0myb domain protein 4r1