PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145933.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 823aa    MW: 93394.1 Da    PI: 5.1836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-09436480246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT+eE+  l   +++ G  +W  Ia  +g++Rt+ qc  r+q 
   XP_009145933.1 436 DPWTAEEENNLRVIIQEKGFTDWLDIAVSLGTNRTPFQCLARYQR 480
                      69*****************************************96 PP
2Myb_DNA-binding45.91.3e-14488534148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r+ WT+eEd++l  av+++G ++W t+a+ +  gR + qc +rw k l
   XP_009145933.1 488 RKEWTAEEDDQLRAAVELYGEKDWQTVANALE-GRAGTQCSNRWKKTL 534
                      789*****************************.***********9975 PP
3Myb_DNA-binding47.15.6e-15542586247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+++ +E+++l+ av+++G  +W++Iar ++ gRt  qc+++w + 
   XP_009145933.1 542 GKFSSDEEKRLKVAVTLFGAQNWHKIARFVP-GRTSTQCREKWANC 586
                      79*****************************.***********885 PP
4Myb_DNA-binding53.65.3e-17594638247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+W++eEd +l +a +++  g+W++Ia++++ +Rt++qc+ rw ++
   XP_009145933.1 594 GKWSKEEDAKLREAMAEHEIGNWSKIASHVP-RRTDNQCRRRWMQL 638
                      89*****************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.133333429IPR017877Myb-like domain
SMARTSM007170.1337431IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-8340356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-8402441IPR009057Homeodomain-like
SuperFamilySSF466897.11E-14411479IPR009057Homeodomain-like
PROSITE profilePS512948.962430482IPR017930Myb domain
SMARTSM007174.6E-8434484IPR001005SANT/Myb domain
PfamPF002494.9E-8436480IPR001005SANT/Myb domain
CDDcd001674.88E-6437482No hitNo description
Gene3DG3DSA:1.10.10.608.5E-12442489IPR009057Homeodomain-like
SuperFamilySSF466893.3E-19467537IPR009057Homeodomain-like
PROSITE profilePS5129421.822483538IPR017930Myb domain
SMARTSM007176.1E-14487536IPR001005SANT/Myb domain
PfamPF002491.6E-12488533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-16490537IPR009057Homeodomain-like
CDDcd001673.42E-11490534No hitNo description
Gene3DG3DSA:1.10.10.603.2E-17539590IPR009057Homeodomain-like
PROSITE profilePS5129412.027539587IPR017930Myb domain
SuperFamilySSF466891.08E-9539584IPR009057Homeodomain-like
SMARTSM007171.7E-11540589IPR001005SANT/Myb domain
PfamPF002491.0E-12542586IPR001005SANT/Myb domain
CDDcd001675.58E-10543585No hitNo description
SuperFamilySSF466897.89E-25570642IPR009057Homeodomain-like
PROSITE profilePS5129425.519588643IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-21591638IPR009057Homeodomain-like
SMARTSM007174.5E-15592641IPR001005SANT/Myb domain
PfamPF002494.6E-16594638IPR001005SANT/Myb domain
CDDcd001671.93E-14595638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MNRGALFESD DDDDEEEDDD GIGEDLEDLR RACIVSESNS DVVTPKSASV EPDGGGRGGE  60
IPSDSENEDD FEMLRSLKSQ LASSTSPPVG LPLPSDSESD DDFELLRSLK SQLALSMNAS  120
LPPMSLSDDE DDDSFETLRA IRRRFSAYAN LDQDGAFMND SLGKKKQVHA SDNEPSREIL  180
SRSNTCESFL DQGKQAGESV GLHENSAIAP LDPTCQSSSF PEAAQDFVEA IRRNRAYQKF  240
LRKKLTEIEA KIEQNEKHQK NVKIVVDFQA SCKRITKQAL SQGKDPRLQL ISTPKCGPRD  300
SSEDNDKKIS PLTFGPSENS CVENYRMAIK NYPVSVNRRS WSTEENENLA KGLKQQLQET  360
LLNEAIERYS DLEGSSDDIE TINESIKNLE ITPEMMRQFL PKVNWDQLAS MYVKDRSAAE  420
CEARWMSSED PLINHDPWTA EEENNLRVII QEKGFTDWLD IAVSLGTNRT PFQCLARYQR  480
SLNADILRKE WTAEEDDQLR AAVELYGEKD WQTVANALEG RAGTQCSNRW KKTLHPTRTR  540
VGKFSSDEEK RLKVAVTLFG AQNWHKIARF VPGRTSTQCR EKWANCLDPN VNHGKWSKEE  600
DAKLREAMAE HEIGNWSKIA SHVPRRTDNQ CRRRWMQLYP HQVPLLQEAT RLRKEAIVGN  660
FVDRESQRPA LLECKFLALP EIPLEPEPEI VAVKKKRKAR PKKADAECES EVSSAAKERR  720
PKRRRKGLER CSGDVCRQEN ETVCENIENL DNGGEVRSLE WYKENQDNVK EKKQRRRRKS  780
VAETSNNSTV TTDCSQVKVG VKKLTPRRKV SAVVPVENQD APN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-274046353155MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-274046353155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145933.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145933.10.0PREDICTED: snRNA-activating protein complex subunit 4 isoform X1
TrEMBLM4E0I30.0M4E0I3_BRARP; Uncharacterized protein
STRINGBra022280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1