PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009145896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34934.2 Da PI: 6.6304 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.8 | 1.4e-55 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv+++ ++ +++ +vd++k+ePwdLp+k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke+++ XP_009145896.1 5 LPPGFRFHPTDEELITYYLCRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR- 97 79*************************999.88***************999999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfykgrapkgek++Wvmheyrle XP_009145896.1 98 SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-63 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.945 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT YYLCRKVSDT GFTGKAVVDV DLNKCEPWDL PAKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ENKQPFTPAK EEWVVCRVFE KSTAIKKPQE QQPQSSFGSP CDANSSMANE 180 FEDIELPNLN SNSSTFGYNH IHDHQYPQTS VYSEDNITSA AGLNMNMNMA TNIPSWTTSL 240 LAPPLSPINS LLLKAFQIRN SYSFPKEMVS NIHPSLHQQG ASNIMQNGSS SSQPQPQEEA 300 FNMDSIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-57 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-57 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009145896.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026658 | 1e-121 | AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. | |||
GenBank | CP002686 | 1e-121 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145897.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-80 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | M4E0M2 | 0.0 | M4E0M2_BRARP; Uncharacterized protein | ||||
STRING | Bra022319.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5527 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 0.0 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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