PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145777.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 687aa    MW: 76430.1 Da    PI: 4.5342
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.31.5e-14584629853
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     t+  +++L e F++nryp+ ++re LAk+l++t +qV++WF N R 
  XP_009145777.1 584 TNPKTQRLFESFQENRYPDISTRENLAKELQMTVKQVSNWFRNTRF 629
                     6678999************************************995 PP
2PHD40.18.5e-14243297150
                     SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD   1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                     +C+ Cg++d   ++++vlCdg C++ fH++C++++l++e++p +  +wlC+ C +
  XP_009145777.1 243 FCSKCGSKDVriDNDIVLCDGfCDRGFHQYCVQPPLRKEDIPPDdeSWLCPGCAC 297
                     69*****44346********88*******************99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-14233298IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-13239297IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.083241298IPR019787Zinc finger, PHD-finger
SMARTSM002493.8E-10243296IPR001965Zinc finger, PHD-type
CDDcd155043.09E-26243295No hitNo description
PfamPF006284.1E-11243297IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590244295IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.698574634IPR001356Homeobox domain
SMARTSM003894.0E-10576638IPR001356Homeobox domain
SuperFamilySSF466899.84E-14582631IPR009057Homeodomain-like
PfamPF000464.7E-12584629IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-13585636IPR009057Homeodomain-like
CDDcd000861.89E-11588628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDRANRRITR SSGGEVTPTP NKVPEAESHM KHFEESAKDV NGNGKGMIAN GVSGEEEQES  60
RTPVTVKKSS GTKFTGSHRE LVLGLPCRGQ FEIKRSSKKI GGSGKENVLA SSHKRAQRSK  120
EAASVHANPT SVNESKKRKN CINKVEVRED DEYTRIKKKL RYFLNRISYE QSLIDAYSLE  180
GWKGSSAEKL RPEKELERAK KEILRRKVKI RELIQHLDTL CAEGNIPESL FNSHGEISSE  240
DIFCSKCGSK DVRIDNDIVL CDGFCDRGFH QYCVQPPLRK EDIPPDDESW LCPGCACKDY  300
SFELLNDSLG TKLSVSDSWE KVFPEAAAAM ADGGGQNLDC DLPSDDSEDE EYDPDGLNDN  360
EGDEDGSDDD SDESENEDGS SDESASEEMI GSFKDANDIM NLPSDDSEDD DYDPDAPARD  420
EDKMQESSNS DDSDSDDGET SSKGDESDQQ DEVTPRGKPG RKKSKLPDVS ISESTDAGFG  480
EDVPGRRKVE RLDYKKLYDE EYENVPTSSS DDEDWDKIAG KEDFESGDEG DTVPLEQPSK  540
AEDQTSTQKP KRENKKVTLK APPEAPIENG CSGQKSSSAS CKQTNPKTQR LFESFQENRY  600
PDISTRENLA KELQMTVKQV SNWFRNTRFS TSKTMSSKED VEKLRTCKER EGETSVAGSS  660
KQTEPVTENK SGASESTSSG SRKRRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RIKKKLR
2484491GRRKVERL
3681685RKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145777.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145777.10.0PREDICTED: homeobox protein HAT3.1-like
RefseqXP_009145778.10.0PREDICTED: homeobox protein HAT3.1-like
RefseqXP_018514694.10.0PREDICTED: homeobox protein HAT3.1-like
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLM4E0Y20.0M4E0Y2_BRARP; Uncharacterized protein
STRINGBra022429.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-154Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]