PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009145673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 22653 Da PI: 10.5229 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+ksF + L H+++H XP_009145673.1 4 HKCKLCSKSFCNGRALGGHMKSH 26 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.598 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.2E-6 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HRPTRKKLSD SVYSSSSSSE GKTLVYGLRE 60 NPRKSFRVFS QDPESSIVYN SDTETEPESV DPVRKRSRTA VSKNKKKKKK KKRSKKMTRY 120 ISSPEPASSV SDGSQEHDLA MCLMMLSRDS RKIELVKKPV LEAEETKPEK RQFPELRRCV 180 IDLNLPPPQE NDVVTVVSAI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 112 | RKRSRTAVSKNKKKKKKKKR |
2 | 106 | 112 | KKKKKKR |
3 | 106 | 115 | KKKKKKRSKK |
4 | 107 | 115 | KKKKKRSKK |
5 | 108 | 115 | KKKKRSKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009145673.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145673.1 | 1e-144 | PREDICTED: zinc finger protein ZAT9-like isoform X1 | ||||
Refseq | XP_009145681.1 | 1e-144 | PREDICTED: zinc finger protein ZAT9-like isoform X2 | ||||
TrEMBL | A0A3P5ZGV3 | 1e-142 | A0A3P5ZGV3_BRACM; Uncharacterized protein | ||||
STRING | Bra038491.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9510 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16610.1 | 5e-84 | C2H2-like zinc finger protein |