PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009145485.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 332aa MW: 36578.9 Da PI: 6.7952

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009145485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.4e-08	253	293	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L XP_009145485.1 253 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 293 69****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.123	244	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-13	249	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.88E-11	250	298	No hit	No description
SMART	SM00353	5.9E-13	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-12	252	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-6	253	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEGLESVYAQ AMYGTNRTME HQGSDLIWGG NGLIPRELCS SSSSSHQLIN PNRGSCFMSD 60 LGVIAEIQHQ QHVGNRAASI DPSSLECLLS ATTNTSTEDD EGISALFSDC QTLWSFGGGI 120 SSAESENREI TTETTTKPKS LKRNRDETGS HFRLVHHPQD DSDKGSFKLI YDENQSKSKK 180 PRTEKGGGSS NISFGHSASL SDNAEPDAEA IAQMKEMIYR AAAFRPVNFG LETVEKPKRK 240 NVKISTDPQT VAARQRRERI SEKIRVLQTL VPGGTKMDTA SMLDEAANYL KFLRAQVKAL 300 ENLRPKLDPT NLSFSSPLFH PSFLPMQNPN QI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	253	258	RQRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009145485.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488617	1e-172	AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBank	AP001305	1e-172	AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBank	BT020364	1e-172	BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBank	CP002686	1e-172	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145485.1	0.0	PREDICTED: transcription factor bHLH87
Refseq	XP_013746748.1	0.0	transcription factor bHLH87
Swissprot	Q8S3D2	0.0	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A078IPX3	0.0	A0A078IPX3_BRANA; BnaA05g36660D protein
TrEMBL	M4ER52	0.0	M4ER52_BRARP; Uncharacterized protein
STRING	Bra031275.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]