PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009145269.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 553aa MW: 60802.6 Da PI: 8.234

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009145269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.1	5.5e-16	280	318	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YCeCfaag++C C+C dC+Nk XP_009145269.1 280 SCKRCNCKRSKCLKLYCECFAAGVYCIGPCSCVDCFNKP 318 689**********************************96 PP
2	TCR	52.5	1e-16	366	404	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN XP_009145269.1 366 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 404 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.3E-18	279	320	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.513	280	406	IPR005172	CRC domain
Pfam	PF03638	9.4E-12	282	317	IPR005172	CRC domain
SMART	SM01114	4.2E-17	366	407	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.0E-12	368	404	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MDTPPKNNSP VFNYINSLSP IKPVRSLPIA QTFGSLSYSS PPSVFTSPHV SSHKGSRFKS 60 DHNHVPASVG DEEALHETEP PQILQNECTT DLLKMCDGNV KQKSETPDWD AMISDSSDIL 120 IFDSMYDSEA SRCFLERPSD SKTRSLGVAK STLEPVINSN DALRRGVRRR CLDFDQTSVA 180 SSSRCVVPSI GLHFNAIALS SKDNNSGNEY PLSGNTELGL QGSITPVLNS QDNVRENETR 240 EDAGQGVEEC PKSLALVELN QSSPKKKRRK FGQAGEGESS CKRCNCKRSK CLKLYCECFA 300 AGVYCIGPCS CVDCFNKPIH EDIVMATRKQ IESRNPLAFA PKVIRNSDSI MEVGDDATSK 360 TPASARHKRG CNCKKSNCLK KYCECYQSGV GCSINCRCEG CKNAFGRKDV SAGSSFTSMD 420 KENETSSRGR TEKQPSTPMP LRQPLAQLPI SSNNMLLTHH HLHGASGSSL HMSQSFRRQD 480 MSLMSHSKIG TITEERAENI ENLIESPMTN MINAVSPNSK RVSLPMELSP WRRNGGRKLL 540 LSIPTFPSLT PHH

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MDTPPKNNSP VFNYINSLSP IKPVRSLPIA QTFGSLSYSS PPSVFTSPHV SSHKGSRFKS  60
DHNHVPASVG DEEALHETEP PQILQNECTT DLLKMCDGNV KQKSETPDWD AMISDSSDIL  120
IFDSMYDSEA SRCFLERPSD SKTRSLGVAK STLEPVINSN DALRRGVRRR CLDFDQTSVA  180
SSSRCVVPSI GLHFNAIALS SKDNNSGNEY PLSGNTELGL QGSITPVLNS QDNVRENETR  240
EDAGQGVEEC PKSLALVELN QSSPKKKRRK FGQAGEGESS CKRCNCKRSK CLKLYCECFA  300
AGVYCIGPCS CVDCFNKPIH EDIVMATRKQ IESRNPLAFA PKVIRNSDSI MEVGDDATSK  360
TPASARHKRG CNCKKSNCLK KYCECYQSGV GCSINCRCEG CKNAFGRKDV SAGSSFTSMD  420
KENETSSRGR TEKQPSTPMP LRQPLAQLPI SSNNMLLTHH HLHGASGSSL HMSQSFRRQD  480
MSLMSHSKIG TITEERAENI ENLIESPMTN MINAVSPNSK RVSLPMELSP WRRNGGRKLL  540
LSIPTFPSLT PHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	282	403	12	120	Protein lin-54 homolog
5fd3_B	1e-16	282	403	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	268	KKKRR
2	264	269	KKKRRK
3	265	269	KKRRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009145269.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018514565.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	M4EYM8	0.0	M4EYM8_BRARP; Uncharacterized protein
STRING	Bra033920.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]