PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009145148.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 578aa MW: 64816.1 Da PI: 4.7416 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.8 | 9.3e-49 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i vd+ykv+P +Lp + +k+++++w++F++r++ky++ r++r t++gyWkatgkd+ ++ XP_009145148.1 13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPTELPglSVLKSGDRQWFYFTPRNRKYPNAARSSRGTATGYWKATGKDRIIVY 106 69***************************.89***************644888899**************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfy+grap+ge+tdWvmhey++ XP_009145148.1 107 -NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139 .999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.869 | 12 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-55 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-25 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MANSCLKEGR FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPTELPGL 60 SVLKSGDRQW FYFTPRNRKY PNAARSSRGT ATGYWKATGK DRIIVYNSRS VGLKKTLVFY 120 RGRAPNGERT DWVMHEYTMD EEELGRCKNA KEYYALYKLY KKSGAGPKNG EEYGAPFQEE 180 EWVDDDDDRE EADNVAVLDD HVVRYENNPR VDDGVFCNPV NVRSDDFNKL LNEIPYAPGL 240 APRQMNELSG VMQVNNEEEI QSTLLNNSSG EFLAPSEVGM FLPNYQPNSM HSSYQSHAAN 300 SFDATEVKSA FNASGMAPFL FEKEDYIEID DLLTPEKGAA SVEKPAQFLN PGEYEHFNDY 360 DQLFHDVSMS FDLEPVFQGT STDLTSLSNF ADNGRQHFLY QQQFQNQTLE SQANSFMDPN 420 PNVNQFIDDM WFKDAQADLY DQTQSSSLAF ASPSSGVMPE SKNPVMSVNA QEQECQNGGE 480 TSSQFSSAMW ALLDSIPSTP ASACEGPLNR TFVRMSSLSR IRFSATSVTT SKVTAAKKGI 540 GNRGFLLLSV VGALCAIFWV FIIATVGVQG RHRDLNLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-44 | 14 | 139 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:23926065}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00178 | DAP | Transfer from AT1G34180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009145148.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145148.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
Refseq | XP_009145149.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
Refseq | XP_009145150.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
Refseq | XP_009145151.1 | 0.0 | PREDICTED: NAC domain-containing protein 16 | ||||
Swissprot | A4FVP6 | 0.0 | NAC16_ARATH; NAC domain-containing protein 16 | ||||
TrEMBL | A0A078GTE2 | 0.0 | A0A078GTE2_BRANA; BnaA05g18430D protein | ||||
TrEMBL | A0A397ZHR7 | 0.0 | A0A397ZHR7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F046 | 0.0 | M4F046_BRARP; Uncharacterized protein | ||||
STRING | Bra034439.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 0.0 | NAC domain containing protein 16 |
Publications ? help Back to Top | |||
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