PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144967.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 354aa    MW: 40555.9 Da    PI: 8.5652
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.4e-114996154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++ykGV +   +g W A+I+       +kr++lg+f +a eAa+a++ a  kl+
  XP_009144967.1 49 TKYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAAAAYDSASIKLR 96
                    69****9888.8******9993.....4*********************99997 PP
2B392.62.9e-29181281189
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f k+ltpsdv+k++rlv+pkk+a +h            g    e+++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+D++vF+
  XP_009144967.1 181 FHKELTPSDVGKLNRLVIPKKHAVKHlpfiserdegetG-GAVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKNLKEKDVIVFY 274
                     89****************************999887752.334999************************************************* PP

                     E-SS.SE CS
              B3  84 ldgr.se 89 
                       +  s+
  XP_009144967.1 275 TCDVpSN 281
                     6554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.99E-1249109No hitNo description
Gene3DG3DSA:3.30.730.102.5E-1650107IPR001471AP2/ERF domain
PROSITE profilePS5103217.22750107IPR001471AP2/ERF domain
SMARTSM003803.2E-1550113IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1450109IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.104.2E-32176275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-28179276IPR015300DNA-binding pseudobarrel domain
CDDcd100179.49E-26180283No hitNo description
PROSITE profilePS5086312.266181290IPR003340B3 DNA binding domain
SMARTSM010192.7E-21181288IPR003340B3 DNA binding domain
PfamPF023621.6E-26181282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MENLLLFLFP RVSHKETSHE ANTTTDTSVS SDLRLAKRMK PTVSPTATTK YKGVVQQQNG  60
HWGAQIYADH KRIWLGTFKS AAEAAAAYDS ASIKLRSFDA NSHRNFPWSE ITIHEPDFQK  120
SHTTEAVLNM IRESSYQQKF SDYLIVRSQM VAIANINIVG SKQRRGGGEE STKCFSCTEL  180
FHKELTPSDV GKLNRLVIPK KHAVKHLPFI SERDEGETGG AVEDVEVVFY DRAMRQWKFR  240
YCYWKSSQSF VFTRGWNGFV KEKNLKEKDV IVFYTCDVPS NFKTLEGQSN KFLMIDVDYF  300
TDKGSVEPKE VNEMVHNVSE REMKTENFFG TKVEEETKSE VSKGGFMLFG VRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2618027313100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144967.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144967.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078GT350.0A0A078GT35_BRANA; BnaA05g15500D protein
TrEMBLA0A397ZJK40.0A0A397ZJK4_BRACM; Uncharacterized protein
STRINGBra030458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-171RAV family protein