PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144943.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 319aa    MW: 36814 Da    PI: 9.7442
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-114290154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    s+ykGV  ++++g W A+I+       +kr++lg+f +  eAa a++ a  kl+
  XP_009144943.1 42 SKYKGVVEHHRNGHWGAQIYID-----HKRIWLGTFKSSVEAAMAYDSASIKLR 90
                    89****99999*******9993.....4*********************99997 PP
2B389.42.8e-28173268185
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...l 84 
                     f k ltpsdv+k++rlv+pk++a ++        +g+  e++++++ d++ r+W+++++y+ +s+++v+t+GWk+Fvk+++Lke+D++vF+   l
  XP_009144943.1 173 FRKGLTPSDVGKLNRLVIPKRHAVKYlpfinereEGEIVEDVEVVFFDKTMRQWKFRYCYWTSSQSFVFTSGWKRFVKEKNLKERDVIVFYrcdL 267
                     7899*************************998885566699**************************************************4443 PP

                     - CS
              B3  85 d 85 
                     +
  XP_009144943.1 268 V 268
                     4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-74290IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1342102IPR016177DNA-binding domain
CDDcd000189.93E-2142101No hitNo description
Gene3DG3DSA:3.30.730.102.9E-1443101IPR001471AP2/ERF domain
PROSITE profilePS5103217.00343101IPR001471AP2/ERF domain
SMARTSM003803.0E-1543107IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-31169278IPR015300DNA-binding pseudobarrel domain
CDDcd100177.25E-25172264No hitNo description
SuperFamilySSF1019362.22E-28172278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.056173283IPR003340B3 DNA binding domain
SMARTSM010198.4E-19173283IPR003340B3 DNA binding domain
PfamPF023621.5E-25173270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTETSTSSNP LLPLKKRKRP VDDTTDNVLA VATKKVALLG NSKYKGVVEH HRNGHWGAQI  60
YIDHKRIWLG TFKSSVEAAM AYDSASIKLR SFDATCHRNF PLNTSTVHEP NFQKGYTTEA  120
VLEMIKDGSY QQKFKDYLSL PFHNVASINL VGSERVQGDQ DSTKYRLTCT ELFRKGLTPS  180
DVGKLNRLVI PKRHAVKYLP FINEREEGEI VEDVEVVFFD KTMRQWKFRY CYWTSSQSFV  240
FTSGWKRFVK EKNLKERDVI VFYRCDLVGQ SKNFLMIHVQ YSSEGEVKTE NFVNSKLKEE  300
ETKSVDNKGG FMLFGVKIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2717226613104DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319LKKRKRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144943.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P51e-134RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3P5ZAT10.0A0A3P5ZAT1_BRACM; Uncharacterized protein
TrEMBLM4ENV60.0M4ENV6_BRARP; Uncharacterized protein
STRINGBra030476.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-127RAV family protein