PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009144689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 31735.6 Da PI: 5.486 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1e-09 | 135 | 182 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i ++ L++l+P + ++ Ka +L + ++Y+ sLq XP_009144689.1 135 SHSIAERARREKISARMKLLQDLVPGC----NRITGKAVMLDEIINYVESLQ 182 8**************************....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-16 | 129 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.25E-9 | 129 | 186 | No hit | No description |
PROSITE profile | PS50888 | 14.932 | 131 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 131 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-7 | 135 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-9 | 137 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDKETEETLN YLLPFGDGND PMMISDFVGR FCDTQEFPVG FPYLGHFGHS QVQESNKSSL 60 LDPGSVSGTG KTRPNSRKRK ESPASNSKMQ EENNAAVAGK QNETEKGENK DKEKLSEPYK 120 DYIHVRARRG QATDSHSIAE RARREKISAR MKLLQDLVPG CNRITGKAVM LDEIINYVES 180 LQRQVQFLSM KLATINPRTE FNAANAMLSA ELGESLSCSE SRFPSEYLAV GKNILSEGFV 240 QAEAPAFWEN DLQSIVHMGF RDCQQQSINC SEPTVQMKIE PER |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009144689.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009144689.1 | 0.0 | PREDICTED: transcription factor bHLH77-like isoform X3 | ||||
Swissprot | Q9LK48 | 1e-106 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | M4F7J8 | 0.0 | M4F7J8_BRARP; Uncharacterized protein | ||||
STRING | Bra037059.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 1e-108 | bHLH family protein |
Publications ? help Back to Top | |||
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