PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144469.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 1114aa    MW: 121154 Da    PI: 8.0851
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.98.8e-08317335119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpC+pC+
  XP_009144469.1 317 CGRHRCERTCHVGPCDPCQ 335
                     ******************6 PP
2zf-NF-X118.16e-06381398118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C++ CH+GpC+ C
  XP_009144469.1 381 CGNHFCSEVCHPGPCGDC 398
                     ****************99 PP
3zf-NF-X125.62.6e-08440457118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+C++ CH G+CppC
  XP_009144469.1 440 CGLHTCNEVCHSGDCPPC 457
                     ****************** PP
4zf-NF-X116.32.1e-05538556119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++ CH G CppC 
  XP_009144469.1 538 CGQHSCESSCHSGHCPPCL 556
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.53E-6140210No hitNo description
PROSITE profilePS500168.911148209IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.465151207IPR001841Zinc finger, RING-type
PROSITE patternPS013590151206IPR019786Zinc finger, PHD-type, conserved site
CDDcd060086.27E-6240300No hitNo description
SMARTSM004380.025262280IPR000967Zinc finger, NF-X1-type
PfamPF014223.3264279IPR000967Zinc finger, NF-X1-type
CDDcd060088.37E-13307355No hitNo description
SMARTSM004384.0E-5317336IPR000967Zinc finger, NF-X1-type
PfamPF014223.4E-6317334IPR000967Zinc finger, NF-X1-type
CDDcd060084.20E-9371416No hitNo description
SMARTSM004382.6E-5381400IPR000967Zinc finger, NF-X1-type
PfamPF014227.1E-5381398IPR000967Zinc finger, NF-X1-type
CDDcd060081.40E-13430477No hitNo description
SMARTSM004382.9E-6440459IPR000967Zinc finger, NF-X1-type
PfamPF014225.2E-7440457IPR000967Zinc finger, NF-X1-type
SMARTSM0043891499530IPR000967Zinc finger, NF-X1-type
PfamPF0142218499510IPR000967Zinc finger, NF-X1-type
CDDcd060081.71E-9528580No hitNo description
SMARTSM004380.0011538557IPR000967Zinc finger, NF-X1-type
PfamPF014229.7E-4538555IPR000967Zinc finger, NF-X1-type
CDDcd060081.66E-6585632No hitNo description
SMARTSM004380.079595613IPR000967Zinc finger, NF-X1-type
PfamPF0142224595612IPR000967Zinc finger, NF-X1-type
SMARTSM004380.13648678IPR000967Zinc finger, NF-X1-type
PfamPF014220.028648663IPR000967Zinc finger, NF-X1-type
CDDcd060082.21E-4676725No hitNo description
SMARTSM004380.14687708IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3303.8E-4939990IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MSSQVRRDRP RSNPHQTWVP RGAANSVAAA VVNEPSLPPP ANTDRTSESL DAGAAASRPL  60
RQRNGSARPS YNNHQRSNNV VGPPPPSRQR RNNAPGILPD YRHRVASRTQ PVNQGKKVVK  120
EEENTTVLAD ANLPQLVQEL QDKLVKSSIE CMICYDMVGR SANIWSCSSC YSIFHMHCIK  180
KWARAPTSVD LLAEKNQGDN WRCPGCQSVQ LTSSREICYR CFCGKRKDPP SDPYLTPHSC  240
GEPCGKPLER EVSAEMDKDD LCPHSCVLQC HPGPCPPCKA FAPPRSCPCG KKMIHTRCSE  300
RRSVLVCGQR CEKLLDCGRH RCERTCHVGP CDPCQVPVNA TCFCKKKAET VICGEMNVKG  360
ELKADDGVYS CNSNCGKPLG CGNHFCSEVC HPGPCGDCDL LPSKVKTCYC GKTRLEEQIR  420
SSCLDPIPSC SNTCRKVLPC GLHTCNEVCH SGDCPPCLVK VNQKCRCGSS FRTVECYFTT  480
SSETEKFVCA KSCGRKKNCG RHRCSERCCP LLNAKKNDLS GDWDPHACQL PCGKNLRCGQ  540
HSCESSCHSG HCPPCLEMIF TDLTCACGRT SIPPPLPCGT PVPSCQLPCS IPQPCGHSAT  600
HGCHFGDCPP CSAPVEKKCV GGHVVLRNIP CGLKDIRCNK ICGKTRRCGL HACARTCHPE  660
PCDGYNESEA VSRVTCGQTC GAPRRDCRHV CAALCHPSLP CPDSRCEFPV TITCSCGRLT  720
ATVPCDAGGE SAGNLRVGSV NKTSVLNKLP TPLQPVESSD NRIPLGQRKL SCDDECAKQE  780
RKRVLQDAFD ITTPNLDSLH FSENSAMTEI ISDIYRRDPK WVLAVEERLK FLVLGKARGS  840
TSALKVHVFC PMQKDKLDMV RLLAERWKLA VSNGGWEPKK FIVVHVTQKS KPPTRIIGAR  900
GGAISVGGPH PPSFDPLVDM DPRLVVSLLD LPREANVSAV VLRFGGECEL VWLNDKNALA  960
VFHDPARAAT AMRRLDHGSV YNGAVVVQNA AQSQSLGNNA WGKLPSSSSW DVQKANPWKK  1020
AVIQESDDSW GADDSPIGGS STDTQASAWR SATSNAPIVT SANRWSVLEP EKPKTSALEP  1080
LVQSGESSSS EAAGKKLVEG SGEEVVDDWE KVCE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144469.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895190.0AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144469.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM4DPL70.0M4DPL7_BRARP; Uncharacterized protein
STRINGBra018458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1