PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144227.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 180aa    MW: 20197.8 Da    PI: 5.5704
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.42.1e-3771071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C +Ck+lrrkC+++Cv+apyf+ e+ +++f ++hk+FGasn +kl+++lp ++r +a++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a++
  XP_009144227.1   7 PCGGCKFLRRKCVEGCVFAPYFCYEEgSANFGAIHKVFGASNFSKLISNLPVHDRCEAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQV 101
                     7***********************9979******************************************************************* PP

          DUF260  95 allkee 100
                     +ll+e+
  XP_009144227.1 102 VLLREQ 107
                     *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8096108IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-357105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSANFGAI HKVFGASNFS KLISNLPVHD  60
RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREQASR KFPQEDCMEQ  120
GKVVAQDMPQ DLHNWFHQVV SDSNLNQMSD VASTTMDRNE SFCSSSESLY YPEVMFPWSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3531017104LOB family transfactor Ramosa2.1
5ly0_B3e-3531017104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-141AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144227.11e-134PREDICTED: LOB domain-containing protein 14
RefseqXP_013748767.11e-134LOB domain-containing protein 14
SwissprotQ9SJW51e-102LBD14_ARATH; LOB domain-containing protein 14
TrEMBLA0A078FFC41e-132A0A078FFC4_BRANA; BnaA05g11430D protein
TrEMBLA0A291LR541e-132A0A291LR54_BRARR; Transcription factor LBD14
STRINGBra018260.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.12e-86LOB domain-containing protein 14
Publications ? help Back to Top
  1. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]