PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009144196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 33223.9 Da PI: 6.2934 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 7.1e-19 | 141 | 191 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a++ + kl+g+ XP_009144196.1 141 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDLQAFKLRGH 191 59****999.**********954...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.59E-34 | 140 | 199 | No hit | No description |
PROSITE profile | PS51032 | 23.933 | 141 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 141 | 199 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 141 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-23 | 141 | 199 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-14 | 142 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 142 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 164 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDFDEELNLC TKGKSIVPSS GEASSTTSPR SIKKMRNPDH RSKPYFPFSS PYSNSLPAFP 60 FSFDPTTQNQ QQQQLGYVPI NQQNNPTIQG QNQMISFSPQ QPQQQQQYMF KYWSDTLNLS 120 PRGRMMMMNQ ESVLPYSSTK LYRGVRQRQW GKWVAEIRKP RSRARLWLGT FDTAEEAAMA 180 YDLQAFKLRG HNATLNFPER FVNKEIEPND STDASSSLHP KQSETPQPNE PNEGNLKSKE 240 VAVSDGGVEE GMAEAWFNAV AAGWGPESPL WDDLDNSQFS QNSTSSCPMK PFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-21 | 140 | 200 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009144196.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013673941.1 | 0.0 | ethylene-responsive transcription factor ERF054-like | ||||
Swissprot | Q9M0J3 | 1e-130 | ERF54_ARATH; Ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | M4EBX1 | 0.0 | M4EBX1_BRARP; Uncharacterized protein | ||||
STRING | Bra026280.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28140.1 | 1e-121 | ERF family protein |
Publications ? help Back to Top | |||
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