PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143974.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 719aa    MW: 80368.9 Da    PI: 6.1333
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-1976131156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  XP_009143974.1  76 RKRYHRHTQQQIQEMENFFKECPHPDDNQRKELSRQLGLDHLQIKFWFQNKRTQNK 131
                     789999***********************************************998 PP
2START158.55.2e-502484662206
                     HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     la  a+ el+++a+ +ep+W++ +   +++  e++++++ + +     +++ea+r++++v+m +++ v  l+d++  W++++a    +a t++++
  XP_009143974.1 248 LAVGAMSELIALAQMNEPLWKEGVhgMILDLNEYTRNLQNGLGpkpvgFRTEASRETAIVFMRHMEIVHRLMDVN-LWSTMFAgmvgRAITHDTL 341
                     67889*******************9999999999999966555999*****************************.*******999999999999 PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                      +g      g+++lm+ae+q+lsplv+ R+ +fvRy++q+g+g w +vd+S+d+  ++  ++++ R   +pSg+li++++n+ s+vtwvehv+++
  XP_009143974.1 342 LTGrqgnldGTIHLMTAEFQVLSPLVSnRECYFVRYCKQHGEGLWGVVDISIDHLIPNL-EPKCLR---RPSGCLIQDMPNRVSRVTWVEHVEVD 432
                     999******************************************************98.788888...*************************9 PP

                     SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +    h+++++l++sg+a ga++w+++l+rqce+
  XP_009143974.1 433 DGGElHAMFKHLLNSGQALGANRWLSALDRQCER 466
                     88878***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-2058131IPR009057Homeodomain-like
SuperFamilySSF466897.52E-1865134IPR009057Homeodomain-like
PROSITE profilePS5007116.55273133IPR001356Homeobox domain
SMARTSM003891.3E-1674137IPR001356Homeobox domain
PfamPF000461.1E-1676131IPR001356Homeobox domain
CDDcd000861.20E-1776134No hitNo description
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PROSITE profilePS5084833.596238469IPR002913START domain
SuperFamilySSF559616.28E-28240467No hitNo description
CDDcd088753.20E-94242465No hitNo description
SMARTSM002348.9E-43247466IPR002913START domain
PfamPF018528.2E-41248466IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-4349451IPR023393START-like domain
SuperFamilySSF559615.5E-13512700No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MTISQLLRRS PRIANMSLPN YMEPVDDVNN NNNGETDNNE NENNNNMNGG ASFGDEEFDS  60
ENQEYGNTQD PRAAKRKRYH RHTQQQIQEM ENFFKECPHP DDNQRKELSR QLGLDHLQIK  120
FWFQNKRTQN KNHQERHENL QLREENTRLR ADNHHFREGL ANASCPNCGG PTAVGEMSFE  180
EHHLLLENAK LTEEIRQLSE VAKYTGKAVM RYPVLPTPNQ APPFEPPMIT NGSLGSVKEA  240
DKPLLIELAV GAMSELIALA QMNEPLWKEG VHGMILDLNE YTRNLQNGLG PKPVGFRTEA  300
SRETAIVFMR HMEIVHRLMD VNLWSTMFAG MVGRAITHDT LLTGRQGNLD GTIHLMTAEF  360
QVLSPLVSNR ECYFVRYCKQ HGEGLWGVVD ISIDHLIPNL EPKCLRRPSG CLIQDMPNRV  420
SRVTWVEHVE VDDGGELHAM FKHLLNSGQA LGANRWLSAL DRQCERLAIM MAPNIPSIEP  480
GGQITVTNNA KQSLLELVER MSRGFFDGVT TSNADIWMNL GGYTGDSVKV TTRTSLNDPG  540
RPEGLILCAA HSFWVPAPPT TVFDYLRDEN NRVNWDVLFL GGNPQKLTHI FNGRDNRNCV  600
SLLRSPNTSQ SEMMMIEKSS TEPAASFLVY APVSVPSMEK VLNGGDPKYV PLLPSGFAIL  660
PDGTAQPGKA GGSLVNVAFQ MLVDSYPSGS LTFSSVSTIE SLILAAANKI KACFTQQTP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143974.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM4CN000.0M4CN00_BRARP; Uncharacterized protein
STRINGBra005588.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2