PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143737.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 285aa    MW: 33049.5 Da    PI: 4.4948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.3e-07162206655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  XP_009143737.1 162 SIAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 206
                     567899*****************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-10148216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.335156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-10160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5162206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.78E-4178209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDCLSHFFDW DQPIQLQDCF IPDVDITILE TDNFFFQSQP QLQFQQPLFQ EEAPLELTDL  60
DYFCDQFLPP QETCLPYPKS EIFNETHDLD SFLPAPKLQK LVNSSYHCNP NFFNYYQELD  120
LAPEPSIFPE FRVPDFPLEF KVDRGDEDRS HGTKKPTLSS QSIAARERRR RIAEKTHELT  180
KLIPGGQKLN TAEMFQAAAK YVKFLQSQVG ILQMMQTAKK THTSDVEIET RVLLGSQAIQ  240
EKLSTDEVCL VPCEMVRDLA SEESIWRNPM IFREINKLLS TNLAN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143737.10.0PREDICTED: transcription factor bHLH53
RefseqXP_022570536.10.0transcription factor bHLH53-like
SwissprotQ84RD01e-133BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A397ZC290.0A0A397ZC29_BRACM; Uncharacterized protein
TrEMBLM4CMF10.0M4CMF1_BRARP; Uncharacterized protein
STRINGBra005389.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-119bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]