PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009143617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 248aa MW: 28736.8 Da PI: 7.2612 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 101.3 | 5.5e-32 | 39 | 144 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k ltpsdv+k++rlv+pk++ae++ e++ l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F++++ + XP_009143617.1 39 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaADAMEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVILFHRHRVD 133 99*****************************99555568889************************************************87779 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++++++++r+ XP_009143617.1 134 GGRFFIGWRRR 144 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-40 | 33 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-30 | 36 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-27 | 38 | 143 | No hit | No description |
SMART | SM01019 | 9.5E-24 | 39 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-29 | 39 | 144 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.142 | 39 | 145 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSINQYSSDF NYHSLMWQQQ QHRHHHHQND VAEEKEALFE KPLTPSDVGK LNRLVIPKQH 60 AERYFPLAAA AADAMEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKQLD 120 AGDVILFHRH RVDGGRFFIG WRRRGNSSSS SDSYRHLQSN ASLQYYPHAG VQAVESQRGN 180 SKTLRLFGVN MECQLDSDLP DPSTPDGSTI CPTSHDQFHL YPQQHYPPPY YMDISFTGDV 240 HQTRSPQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-48 | 34 | 144 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-48 | 34 | 144 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009143617.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232575 | 0.0 | AC232575.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010A05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143617.1 | 0.0 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q8GYJ2 | 1e-144 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A3P5Z3J2 | 0.0 | A0A3P5Z3J2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CM64 | 0.0 | M4CM64_BRARP; Uncharacterized protein | ||||
STRING | Bra005301.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 1e-110 | B3 family protein |
Publications ? help Back to Top | |||
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