PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009143276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 40596.5 Da PI: 9.0809 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 4e-17 | 57 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+te d l ++v++lG+++W++Iar ++ gR++k+c++rw + XP_009143276.1 57 KGPWSTEQDAVLTRLVNKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 102 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 109 | 152 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T eE+ ll a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_009143276.1 109 RKPFTDEEENLLMSAHAVHGNK-WSVIAKLLP-GRTDNAIKNHWNS 152 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.165 | 52 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-29 | 54 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-14 | 56 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 57 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 58 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-12 | 59 | 101 | No hit | No description |
PROSITE profile | PS51294 | 25.502 | 104 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 109 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.17E-12 | 111 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 111 | 157 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MNSETVNQTP PTTPSTPFYD SSEDAINAAV DFELAAVREV GGDSNGSNGG GGRSKAKGPW 60 STEQDAVLTR LVNKLGPRNW TLIARGIPGR SGKSCRLRWC NQLDPCLKRK PFTDEEENLL 120 MSAHAVHGNK WSVIAKLLPG RTDNAIKNHW NSALKRKHAD LWNNHHSISN TVNASSSRKE 180 ETNHHPPSVS TDVKMEDVAS KPREGKPGVY RPVARLGAFS VYRPGYMNQR VDPCEGPLVQ 240 AARPGSLGGQ FLQSLCYQTN VPSRCGHGCC NQQPEKRLSS SVLGPEFVDY EEPSSVGLDQ 300 ELVSIATDLN NIAWIRSGLN NSYAREVGQR LNADSRFHFE HARARGKFTG MVNNGMPSQM 360 LRQDLRALI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-36 | 57 | 157 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009143276.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143276.1 | 0.0 | PREDICTED: myb-like protein AA | ||||
Swissprot | O04192 | 1e-137 | MYB25_ARATH; Transcription factor MYB25 | ||||
TrEMBL | M4CLB9 | 0.0 | M4CLB9_BRARP; Uncharacterized protein | ||||
STRING | Bra005006.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5638 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39880.1 | 1e-135 | myb domain protein 25 |
Publications ? help Back to Top | |||
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