PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143276.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 369aa    MW: 40596.5 Da    PI: 9.0809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding544e-1757102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W+te d  l ++v++lG+++W++Iar ++ gR++k+c++rw + 
   XP_009143276.1  57 KGPWSTEQDAVLTRLVNKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 102
                      79******************************.***********985 PP

2Myb_DNA-binding543.9e-17109152146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T eE+ ll  a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_009143276.1 109 RKPFTDEEENLLMSAHAVHGNK-WSVIAKLLP-GRTDNAIKNHWNS 152
                      789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.16552103IPR017930Myb domain
SuperFamilySSF466891.91E-2954150IPR009057Homeodomain-like
SMARTSM007175.0E-1456105IPR001005SANT/Myb domain
PfamPF002491.8E-1557102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2358110IPR009057Homeodomain-like
CDDcd001671.01E-1259101No hitNo description
PROSITE profilePS5129425.502104158IPR017930Myb domain
SMARTSM007171.6E-15108156IPR001005SANT/Myb domain
PfamPF002491.7E-15109152IPR001005SANT/Myb domain
CDDcd001678.17E-12111151No hitNo description
Gene3DG3DSA:1.10.10.605.2E-24111157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNSETVNQTP PTTPSTPFYD SSEDAINAAV DFELAAVREV GGDSNGSNGG GGRSKAKGPW  60
STEQDAVLTR LVNKLGPRNW TLIARGIPGR SGKSCRLRWC NQLDPCLKRK PFTDEEENLL  120
MSAHAVHGNK WSVIAKLLPG RTDNAIKNHW NSALKRKHAD LWNNHHSISN TVNASSSRKE  180
ETNHHPPSVS TDVKMEDVAS KPREGKPGVY RPVARLGAFS VYRPGYMNQR VDPCEGPLVQ  240
AARPGSLGGQ FLQSLCYQTN VPSRCGHGCC NQQPEKRLSS SVLGPEFVDY EEPSSVGLDQ  300
ELVSIATDLN NIAWIRSGLN NSYAREVGQR LNADSRFHFE HARARGKFTG MVNNGMPSQM  360
LRQDLRALI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-36571577107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143276.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143276.10.0PREDICTED: myb-like protein AA
SwissprotO041921e-137MYB25_ARATH; Transcription factor MYB25
TrEMBLM4CLB90.0M4CLB9_BRARP; Uncharacterized protein
STRINGBra005006.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-135myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]