PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143241.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 556aa    MW: 61624.5 Da    PI: 7.2381
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08262282526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  XP_009143241.1 262 PCPEFRK-GSCPKGDSCEYAHG 282
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.6E-1532175IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.23E-1332158IPR020683Ankyrin repeat-containing domain
SMARTSM002486.0E-476106IPR002110Ankyrin repeat
PROSITE profilePS5029714.63776157IPR020683Ankyrin repeat-containing domain
PfamPF136372.0E-877129No hitNo description
CDDcd002041.04E-1278174No hitNo description
SMARTSM00248150111143IPR002110Ankyrin repeat
PROSITE profilePS500888.576111146IPR002110Ankyrin repeat
PROSITE profilePS5010313.976257284IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6262283IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5262282IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465292316IPR000571Zinc finger, CCCH-type
SMARTSM0035637292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MCGSESKLCS SRTLTEAESM RQKSQEGVAA ATCLLELAAC DDLPSFRREI EENSLDINEP  60
GFWYCRRVGS KKMGFQERTP LMVAAMYGSI EVLTYIISTG RSDVNKVSSD EKVTALHCAV  120
SACSVSIVQV IRILLDASAS PNTLDGNGNK PVDLLVKASR FIPNQTRKAV EILLTGTHGL  180
VGLMEEEEEE EVKSVVSKYP ADASLPDINE GVYGTDEFRM FSFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYPYTC VPCPEFRKGS CPKGDSCEYA HGVFESWLHP GQYRTRLCKD  300
ETGCARRVCF FAHRRDELRP VNASTGSAMV SPQSPMSSPM GDNGVPLSPR NVGLWQNTPP  360
PLQLNGSRLK SSLSARDMDV EMELRLRGFD GHRLNDSVMS PSRHSQMNHY PSSPVRQAPP  420
QRFESSAAMA AAVMNARSSA FAKRSLSFKP APVAASNVSD WGSPNGKVEW GMQREEMNKM  480
RRSVSFGING NNNNNVSHPV RDYSDEPDVS WVNSLVKDSA QEGAFGLNGA AVRDEFKLPL  540
WAEQMYIDHE KRQPVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.167800.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143241.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143241.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLM4CL950.0M4CL95_BRARP; Uncharacterized protein
STRINGBra004982.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein