PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143232.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 385aa    MW: 43319 Da    PI: 9.4493
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.3e-2880134255
         G2-like   2 prlrWtpeLHerFveaveqLGGsek.AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtpeLH rF++ave+ GG++  AtPk +l+lm+vkgL ++hvkSHLQ+YR+
  XP_009143232.1  80 PRLRWTPELHLRFLQAVEKFGGPDTgATPKLVLQLMNVKGLCIAHVKSHLQMYRS 134
                     8**********************9669***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.94376137IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2776135IPR009057Homeodomain-like
SuperFamilySSF466891.38E-1477136IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-2180136IPR006447Myb domain, plants
PfamPF002493.5E-1081133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MRSSSQSSEN SKTCPSNNFK ETTKKEDNKD DENKDEEARS VDQIPSNNSY VEESGSHHHN  60
NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVEKFG GPDTGATPKL VLQLMNVKGL  120
CIAHVKSHLQ MYRSKKTDDP NQGNQGFSFE HGAGYTYNLG QLPMLQSFDQ RPSTSLGYDG  180
GSWTDRRRQV YRSPWRGLTA RNSTRTRPTL FSSQSGERFR GVSNSILDDK NKTISFRINS  240
HEAAQASNGV GESVPSIHRS FLEGPQDHIA TTLSSNQREN PRVAEETENV LKRKRLLLSD  300
DCNKSVQDLD LSLSLKVHRT HNNLGDCLLE DEEKKLDDHE DIKGLSLSLA SSSSSKLGRD  360
IRKEVQNDTK KRKISVLASP LDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1481136357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1481136357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1481136357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1481136357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070206e-88AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence.
GenBankAF0852796e-88AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence.
GenBankCP0026856e-88CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143232.10.0PREDICTED: uncharacterized protein LOC103866965 isoform X3
TrEMBLA0A397Z6X70.0A0A397Z6X7_BRACM; Uncharacterized protein
STRINGBra004973.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-177G2-like family protein