PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009142947.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 835aa MW: 92337.1 Da PI: 5.8195

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.5e-29	537	587	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+++l++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ XP_009142947.1 537 EKNVTLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 587 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	526	607	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-28	539	587	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-22	729	820	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-23	733	814	No hit	No description
SMART	SM00666	2.5E-23	735	817	IPR000270	PB1 domain
PROSITE profile	PS51745	20.899	735	817	IPR000270	PB1 domain
Pfam	PF00564	2.5E-17	736	816	IPR000270	PB1 domain
CDD	cd06407	1.18E-36	736	816	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MILLSIIDEM EHPFASRDKG FGYQDIPTEQ QMDVLSFGSA DMLNSSELMN FDSFSTWFNT 60 PSPTDLLFSQ YGLSTFGATT SSHPPEPRAG LTRSFHDLER SSVQQMSSQF HCSLDINELS 120 GKRRRVVNQT IPRSLSHSLD EKMLKALSLF IESSSGLGEG ILAQIWTPIK AGDQFILSTC 180 DQAYLLDPRL SNYREVSRKF TFASKPNQCS SSPGLPGRVF ISGVREWTSN VRYYKRDEYL 240 RMKHAVDNEV RGSIAIPILE EASGTSCCAV MELVTSKEKH DFDVEMESVC RALQAVNLRT 300 SEIPRPQYLS SNQREALAEI KDVLRAVCHA HKLPLALAWL PCSNGPNSLV LCVEETACYV 360 NDMEMEGFVQ ACLEHCLREK EGIVGKAFVS NQPSFASDVK VYDIGEYPLV HHARKYGLNA 420 AVAIKLRSTY TGEDDYILEL FLPISMKGSL EQQLLLDSLS GTLQRICRTL RTVSDVGATK 480 RSGEISTCSR NLQTIVLDCE LNANSSDKDN SSTGSQATFE QDMSKARTPE KKKSTTEKNV 540 TLSVLQQHFS GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS LRKIQTVLDS 600 VQGVEGGLRF DSARGEFVAA GPTPKGPSSN GNNACEDTSF ELLKAKSVDN AVKLEDDIIT 660 NDSFMDASGQ QWDWMAEQSG FNGKLSSPVT DGMETTIRSM SDSSNSSGAV VLGSSSTSMD 720 DRNQTRTQGE SGSTTLTVKA TYREDTIRFK FESSAGCSQL YKEVSKRFKL QEGSFQLKYL 780 DDEEEWVLMV TDADLQECLE ILYGMGKHTV KFLVRDLPAP IGSSGGSNGY LGTCL

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MILLSIIDEM EHPFASRDKG FGYQDIPTEQ QMDVLSFGSA DMLNSSELMN FDSFSTWFNT  60
PSPTDLLFSQ YGLSTFGATT SSHPPEPRAG LTRSFHDLER SSVQQMSSQF HCSLDINELS  120
GKRRRVVNQT IPRSLSHSLD EKMLKALSLF IESSSGLGEG ILAQIWTPIK AGDQFILSTC  180
DQAYLLDPRL SNYREVSRKF TFASKPNQCS SSPGLPGRVF ISGVREWTSN VRYYKRDEYL  240
RMKHAVDNEV RGSIAIPILE EASGTSCCAV MELVTSKEKH DFDVEMESVC RALQAVNLRT  300
SEIPRPQYLS SNQREALAEI KDVLRAVCHA HKLPLALAWL PCSNGPNSLV LCVEETACYV  360
NDMEMEGFVQ ACLEHCLREK EGIVGKAFVS NQPSFASDVK VYDIGEYPLV HHARKYGLNA  420
AVAIKLRSTY TGEDDYILEL FLPISMKGSL EQQLLLDSLS GTLQRICRTL RTVSDVGATK  480
RSGEISTCSR NLQTIVLDCE LNANSSDKDN SSTGSQATFE QDMSKARTPE KKKSTTEKNV  540
TLSVLQQHFS GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS LRKIQTVLDS  600
VQGVEGGLRF DSARGEFVAA GPTPKGPSSN GNNACEDTSF ELLKAKSVDN AVKLEDDIIT  660
NDSFMDASGQ QWDWMAEQSG FNGKLSSPVT DGMETTIRSM SDSSNSSGAV VLGSSSTSMD  720
DRNQTRTQGE SGSTTLTVKA TYREDTIRFK FESSAGCSQL YKEVSKRFKL QEGSFQLKYL  780
DDEEEWVLMV TDADLQECLE ILYGMGKHTV KFLVRDLPAP IGSSGGSNGY LGTCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	125	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142947.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220674	5e-81	AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBank	BT010459	5e-81	BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142947.1	0.0	PREDICTED: protein NLP8-like isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M4CKN2	0.0	M4CKN2_BRARP; Uncharacterized protein
STRING	Bra004767.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]