PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009142946.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 866aa MW: 95690 Da PI: 5.6974

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.6	1.6e-25	537	618	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg...............................vclTvLKriCRqyGIkRWPhRkiksl 52 ek+++l++l+++Fs+++kdAAk+Lg vc+T+LKriCRq+GI+RWP+Rki+++ XP_009142946.1 537 EKNVTLSVLQQHFSGSLKDAAKSLGgevftlsqalmhfylpdkvsngldfgsnlvaVCPTTLKRICRQHGIMRWPSRKINKV 618 89******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	6.7E-25	539	618	IPR003035	RWP-RK domain
PROSITE profile	PS51519	13.174	547	638	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-22	760	851	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-23	764	845	No hit	No description
SMART	SM00666	2.5E-23	766	848	IPR000270	PB1 domain
PROSITE profile	PS51745	20.899	766	848	IPR000270	PB1 domain
CDD	cd06407	1.12E-36	767	847	No hit	No description
Pfam	PF00564	2.6E-17	767	847	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MILLSIIDEM EHPFASRDKG FGYQDIPTEQ QMDVLSFGSA DMLNSSELMN FDSFSTWFNT 60 PSPTDLLFSQ YGLSTFGATT SSHPPEPRAG LTRSFHDLER SSVQQMSSQF HCSLDINELS 120 GKRRRVVNQT IPRSLSHSLD EKMLKALSLF IESSSGLGEG ILAQIWTPIK AGDQFILSTC 180 DQAYLLDPRL SNYREVSRKF TFASKPNQCS SSPGLPGRVF ISGVREWTSN VRYYKRDEYL 240 RMKHAVDNEV RGSIAIPILE EASGTSCCAV MELVTSKEKH DFDVEMESVC RALQAVNLRT 300 SEIPRPQYLS SNQREALAEI KDVLRAVCHA HKLPLALAWL PCSNGPNSLV LCVEETACYV 360 NDMEMEGFVQ ACLEHCLREK EGIVGKAFVS NQPSFASDVK VYDIGEYPLV HHARKYGLNA 420 AVAIKLRSTY TGEDDYILEL FLPISMKGSL EQQLLLDSLS GTLQRICRTL RTVSDVGATK 480 RSGEISTCSR NLQTIVLDCE LNANSSDKDN SSTGSQATFE QDMSKARTPE KKKSTTEKNV 540 TLSVLQQHFS GSLKDAAKSL GGEVFTLSQA LMHFYLPDKV SNGLDFGSNL VAVCPTTLKR 600 ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLR FDSARGEFVA AGPTPKGPSS 660 NGNNACEDTS FELLKAKSVD NAVKLEDDII TNDSFMDASG QQWDWMAEQS GFNGKLSSPV 720 TDGMETTIRS MSDSSNSSGA VVLGSSSTSM DDRNQTRTQG ESGSTTLTVK ATYREDTIRF 780 KFESSAGCSQ LYKEVSKRFK LQEGSFQLKY LDDEEEWVLM VTDADLQECL EILYGMGKHT 840 VKFLVRDLPA PIGSSGGSNG YLGTCL

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MILLSIIDEM EHPFASRDKG FGYQDIPTEQ QMDVLSFGSA DMLNSSELMN FDSFSTWFNT  60
PSPTDLLFSQ YGLSTFGATT SSHPPEPRAG LTRSFHDLER SSVQQMSSQF HCSLDINELS  120
GKRRRVVNQT IPRSLSHSLD EKMLKALSLF IESSSGLGEG ILAQIWTPIK AGDQFILSTC  180
DQAYLLDPRL SNYREVSRKF TFASKPNQCS SSPGLPGRVF ISGVREWTSN VRYYKRDEYL  240
RMKHAVDNEV RGSIAIPILE EASGTSCCAV MELVTSKEKH DFDVEMESVC RALQAVNLRT  300
SEIPRPQYLS SNQREALAEI KDVLRAVCHA HKLPLALAWL PCSNGPNSLV LCVEETACYV  360
NDMEMEGFVQ ACLEHCLREK EGIVGKAFVS NQPSFASDVK VYDIGEYPLV HHARKYGLNA  420
AVAIKLRSTY TGEDDYILEL FLPISMKGSL EQQLLLDSLS GTLQRICRTL RTVSDVGATK  480
RSGEISTCSR NLQTIVLDCE LNANSSDKDN SSTGSQATFE QDMSKARTPE KKKSTTEKNV  540
TLSVLQQHFS GSLKDAAKSL GGEVFTLSQA LMHFYLPDKV SNGLDFGSNL VAVCPTTLKR  600
ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLR FDSARGEFVA AGPTPKGPSS  660
NGNNACEDTS FELLKAKSVD NAVKLEDDII TNDSFMDASG QQWDWMAEQS GFNGKLSSPV  720
TDGMETTIRS MSDSSNSSGA VVLGSSSTSM DDRNQTRTQG ESGSTTLTVK ATYREDTIRF  780
KFESSAGCSQ LYKEVSKRFK LQEGSFQLKY LDDEEEWVLM VTDADLQECL EILYGMGKHT  840
VKFLVRDLPA PIGSSGGSNG YLGTCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	125	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142946.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM162666	7e-71	AM162666.1 Brassica napus rti-1 gene for rapeseed putative trypsin inhibitor 1, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142946.1	0.0	PREDICTED: protein NLP8-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M4CKN2	0.0	M4CKN2_BRARP; Uncharacterized protein
STRING	Bra004767.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]