PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142767.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 419aa    MW: 46421.9 Da    PI: 8.8828
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1763122155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_009142767.1  63 SIYRGVTRHRWTGRYEAHLWDkTTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 122
                     57*******************777744468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-1763131IPR016177DNA-binding domain
PfamPF008475.9E-1363122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1564131IPR001471AP2/ERF domain
SMARTSM003806.4E-2664136IPR001471AP2/ERF domain
PROSITE profilePS5103220.08664130IPR001471AP2/ERF domain
PRINTSPR003674.1E-56576IPR001471AP2/ERF domain
PRINTSPR003674.1E-5112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MASSDQGPKT EAGGGGESSE TVAAASDEML LYRGFKKAKK ERGCTAKERI SKMPPCTAGK  60
RSSIYRGVTR HRWTGRYEAH LWDKTTWNQN QNKKGKQVYL GAYDDEEAAA RAYDLAALKY  120
WGPGTLINFP VTDYSRDLEE MQNLSREEYL ASLRRYPFGR KSSGFSRGIA KYRGLQSRWD  180
ASASRMPGPE YFSNMHYGAG DERGTEGDFL GNFCLERKID LTGYIKWWGV NKPRQPESSS  240
SKASEDAKVE DAGTELKTLE HTSHATEPYK APNLGVLQRK EKQISSSALS ILSASPAYKS  300
LEEKVLKIQE SSSSARENDE NANRNIINME KSHGKEIEKP VVSLGSGGVV PSGALSLQKS  360
MYPLTSLLTS PLLTNYNTLD PLGDPILWTP FLPPGSSHTS EVTKTETSCS TYSYLPQEK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187890.0AK118789.1 Arabidopsis thaliana At2g41710 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL21-12-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142767.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A397Z5Z40.0A0A397Z5Z4_BRACM; Uncharacterized protein
STRINGBra004641.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.20.0AP2 family protein