PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142615.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 254aa    MW: 29599.7 Da    PI: 4.5484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-192982356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++f++eq++ Le +Fe++ ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  XP_009142615.1 29 NQRRFSDEQIKSLEMMFESETKLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 82
                    6689*************************************************9 PP
2HD-ZIP_I/II122.42.3e-3929120293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ++rr+s+eq+k+LE++Fe+e+kLep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++++ Lk++y+ l+++ e+L+ke+++L +el++
  XP_009142615.1  29 NQRRFSDEQIKSLEMMFESETKLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEFNILKQNYNDLASQFESLKKEKQALVSELHR 120
                     68*************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-181586IPR009057Homeodomain-like
PROSITE profilePS5007117.4912484IPR001356Homeobox domain
SMARTSM003893.6E-162788IPR001356Homeobox domain
CDDcd000861.58E-152785No hitNo description
PfamPF000461.4E-162982IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-183090IPR009057Homeodomain-like
PRINTSPR000317.6E-65564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000317.6E-66480IPR000047Helix-turn-helix motif
PfamPF021833.7E-1484125IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTEGEEYCLA RMSVDPFMAM KKSNYNKNNQ RRFSDEQIKS LEMMFESETK LEPRKKVQLA  60
RELGLQPRQV AIWFQNKRAR WKSKQLETEF NILKQNYNDL ASQFESLKKE KQALVSELHR  120
LNEEVQKTHE EKRLCCGDQA AVVALSSTDH ESENEENTRR EQEEEVRPEM EVCEKGDDGV  180
LCGHHNDDYD DGGYNNDIKR EYFGGFGEEA DHLMNIVEPA DSCLTSSDDW GGFKSNANLL  240
DQSSSNCPWW DFWS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.198200.0bud| flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142615.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142615.10.0PREDICTED: homeobox-leucine zipper protein ATHB-7
RefseqXP_013747603.10.0homeobox-leucine zipper protein ATHB-7
SwissprotP468971e-137ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A3P5YNU90.0A0A3P5YNU9_BRACM; Uncharacterized protein
TrEMBLM4CJY20.0M4CJY2_BRARP; Uncharacterized protein
STRINGBra004516.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-120homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]