PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142591.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 297aa    MW: 33821.8 Da    PI: 6.4313
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31016.8e-3236141199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed+ g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_009142591.1  36 FDKVVTPSDVGKLNRLVIPKQYAERYfpldSSTNEKGLLLNFEDLAGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCvGDsgR 130
                     89***************************966778999*************************************************44333246 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  XP_009142591.1 131 DSRLFIDWRRR 141
                     77788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4130143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-3033128IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-2634136No hitNo description
PROSITE profilePS5086315.10136142IPR003340B3 DNA binding domain
SMARTSM010197.2E-2436142IPR003340B3 DNA binding domain
PfamPF023623.0E-2936141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMMTNLSLSR EGEEEEEEEQ EEAKKPMEEV EREHMFDKVV TPSDVGKLNR LVIPKQYAER  60
YFPLDSSTNE KGLLLNFEDL AGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS  120
FQRCVGDSGR DSRLFIDWRR RPKVPDHPTS IAHFAAGSMF PRFYSFPTAT SYNLYNYQQP  180
RHHHHSGYNY PQIPREFGYG YLVDQRAVVA DPLVIESVPV MMHGGAQVSQ AVVGTAGKRL  240
RLFGVDMEEE SSSSGGSLPR GDASPSSSLF QLRLGSSSED DHFSKKGKSS LPFDLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-77301442116B3 domain-containing transcription factor NGA1
5os9_B5e-77301442116B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.37011e-163leaf| root
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142591.10.0PREDICTED: B3 domain-containing transcription factor NGA1
SwissprotO827991e-154NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A3P5YNX10.0A0A3P5YNX1_BRACM; Uncharacterized protein
TrEMBLM4CJW70.0M4CJW7_BRARP; Uncharacterized protein
STRINGBra004501.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-148B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]