PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 455aa MW: 48587.9 Da PI: 8.7665 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 9e-12 | 54 | 77 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+rC+F+H+p XP_009142499.1 54 PDCAYYMRTGVCGYGSRCRFNHPP 77 78********************97 PP | |||||||
2 | zf-CCCH | 38.7 | 1.7e-12 | 100 | 122 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+f+++tGtCk+G++CkF+H++ XP_009142499.1 100 PCQFYLKTGTCKFGASCKFNHPR 122 7********************96 PP | |||||||
3 | zf-CCCH | 33.5 | 7.3e-11 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++f++tG+Ck+G +CkF+H+ XP_009142499.1 145 GENECSYFLKTGQCKFGITCKFHHP 169 5679********************8 PP | |||||||
4 | zf-CCCH | 37.8 | 3.1e-12 | 288 | 314 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +CkF+H++ XP_009142499.1 288 PGEPECQYYLKTGDCKFGTSCKFHHPR 314 5799*********************96 PP | |||||||
5 | zf-CCCH | 33.5 | 7e-11 | 335 | 359 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C+f+ ++G+Ck+G++CkF H+ XP_009142499.1 335 GVQRCSFYVQNGFCKFGSTCKFDHP 359 6779********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.6E-5 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.779 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 54 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 56 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-10 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.864 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-5 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 287 | 315 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 287 | 314 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 289 | 314 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 292 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 293 | 315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 333 | 361 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-6 | 333 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 335 | 364 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 335 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-5 | 339 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MDMYGRTPPT AMNGSHAPPQ WTPGDADTGL LLQESSMWRL GLGSETYPQR AGAPDCAYYM 60 RTGVCGYGSR CRFNHPPDRA SVEATVRATG QYPERIGALP CQFYLKTGTC KFGASCKFNH 120 PRNAAAGGSM THVPLNIYGY PVRQGENECS YFLKTGQCKF GITCKFHHPH PASASASASA 180 AATLPPPASA PQFYSSVQHH SLMPGPPSSS LRPLLPGSYM QGAYGPMLLT TPGVLPIQAW 240 NPYSAPVSPA LSPGAASLYG VTQLSSTTPG VYPSGVVTLK EESFPERPGE PECQYYLKTG 300 DCKFGTSCKF HHPRDRVPPR PNCDLSSIGL PLRPGVQRCS FYVQNGFCKF GSTCKFDHPV 360 GTIRYNPSAS SLADAPVAPY PVTSLLASSS SSSAELIPGD PYLGASSRST SNNISAGLIF 420 SQSGVSLPPF TDLQTSLSLS GSRITRQGRE IRRSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142499.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189634 | 0.0 | AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142499.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A3P5ZAS4 | 0.0 | A0A3P5ZAS4_BRACM; Uncharacterized protein | ||||
STRING | Bra004427.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |