PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009142498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 456aa MW: 48658.9 Da PI: 8.7665 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 9e-12 | 55 | 78 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+rC+F+H+p XP_009142498.1 55 PDCAYYMRTGVCGYGSRCRFNHPP 78 78********************97 PP | |||||||
2 | zf-CCCH | 38.7 | 1.7e-12 | 101 | 123 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+f+++tGtCk+G++CkF+H++ XP_009142498.1 101 PCQFYLKTGTCKFGASCKFNHPR 123 7********************96 PP | |||||||
3 | zf-CCCH | 33.5 | 7.3e-11 | 146 | 170 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++f++tG+Ck+G +CkF+H+ XP_009142498.1 146 GENECSYFLKTGQCKFGITCKFHHP 170 5679********************8 PP | |||||||
4 | zf-CCCH | 37.8 | 3.1e-12 | 289 | 315 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +CkF+H++ XP_009142498.1 289 PGEPECQYYLKTGDCKFGTSCKFHHPR 315 5799*********************96 PP | |||||||
5 | zf-CCCH | 33.5 | 7e-11 | 336 | 360 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C+f+ ++G+Ck+G++CkF H+ XP_009142498.1 336 GVQRCSFYVQNGFCKFGSTCKFDHP 360 6779********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.779 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 55 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 55 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 57 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 101 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-10 | 101 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 101 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.864 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-5 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-8 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 288 | 315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 288 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 290 | 315 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 293 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 294 | 316 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-6 | 334 | 361 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 334 | 362 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 336 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-5 | 340 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence Send to blast |
MDMYGRTPPT AMNGSHAPPQ WTPGDADTGL LLQAESSMWR LGLGSETYPQ RAGAPDCAYY 60 MRTGVCGYGS RCRFNHPPDR ASVEATVRAT GQYPERIGAL PCQFYLKTGT CKFGASCKFN 120 HPRNAAAGGS MTHVPLNIYG YPVRQGENEC SYFLKTGQCK FGITCKFHHP HPASASASAS 180 AAATLPPPAS APQFYSSVQH HSLMPGPPSS SLRPLLPGSY MQGAYGPMLL TTPGVLPIQA 240 WNPYSAPVSP ALSPGAASLY GVTQLSSTTP GVYPSGVVTL KEESFPERPG EPECQYYLKT 300 GDCKFGTSCK FHHPRDRVPP RPNCDLSSIG LPLRPGVQRC SFYVQNGFCK FGSTCKFDHP 360 VGTIRYNPSA SSLADAPVAP YPVTSLLASS SSSSAELIPG DPYLGASSRS TSNNISAGLI 420 FSQSGVSLPP FTDLQTSLSL SGSRITRQGR EIRRSF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009142498.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189634 | 0.0 | AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142498.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A3P5ZAS4 | 0.0 | A0A3P5ZAS4_BRACM; Uncharacterized protein | ||||
STRING | Bra004427.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5912 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |