PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142494.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 334aa    MW: 37891 Da    PI: 6.2272
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.5e-061244234
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                    + r+C+ +e+  +  +C+ ++  lC  C  + H
  XP_009142494.1 12 QHRICDYCESSVALVYCKADSAKLCLACDNQVH 44
                    6789**************************999 PP
2zf-B_box231.6e-075799442
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                      C+ +++ + + fC + ++ lC++C  ++H +    H+++pl
  XP_009142494.1 57 LLCDSCDDSPSSVFCDTESSVLCQNCDWQHHTSasslHSRRPL 99
                    57***************************88668999988875 PP
3CCT58.22.9e-20290332143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     R+ al+RYk K+k+R++eK+irYesRK++Ae+R R++GrF+k+
  XP_009142494.1 290 RNSALSRYKAKKKSRRYEKHIRYESRKVRAETRTRIRGRFAKS 332
                     899**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1111158IPR000315B-box-type zinc finger
SMARTSM003363.1E-121158IPR000315B-box-type zinc finger
CDDcd000213.00E-61458No hitNo description
PROSITE profilePS5011910.3675499IPR000315B-box-type zinc finger
CDDcd000214.72E-75899No hitNo description
SMARTSM003360.35999IPR000315B-box-type zinc finger
PROSITE profilePS5101714.376290332IPR010402CCT domain
PfamPF062032.1E-14290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEKEEEEGSH QQHRICDYCE SSVALVYCKA DSAKLCLACD NQVHVTNQLF SKHFRSLLCD  60
SCDDSPSSVF CDTESSVLCQ NCDWQHHTSA SSLHSRRPLE GFSGCPSVTE LLALVGLDDL  120
TDKALFLPHP GGGSEQTLPQ IVSLNDLVAS DGSSHNYRAM DVPPLPKNRH ATCGRHKEEM  180
IRQLRELSRS EPSCLKYETL DNDAELDTTG FLFLEPGNDL FSSTFESQVS GLKWFEDQQE  240
DYYPYSDDNN VNQRGCCTHQ QQEQESSPVM VPVSTSTTTR LTHEINSLER NSALSRYKAK  300
KKSRRYEKHI RYESRKVRAE TRTRIRGRFA KSHP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.19250.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142494.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896340.0AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142494.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822561e-149COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLM4CJN90.0M4CJN9_BRARP; Uncharacterized protein
STRINGBra004423.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-121B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]