PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009142429.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 372aa MW: 40659.6 Da PI: 8.9178

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.1e-39	77	138	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss XP_009142429.1 77 PQEKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 138 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	76	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-33	79	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDATKWTQGF QEMMNVKPME QIMIPNNNTH QSNTTSSARP NTVLTSSGGV SAAGAIVSTG 60 VSNSNNTSVV VERKSRPQEK INCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGS 120 LRNVPVGGSS RKNKRSSSSN LLQTTPSSLG LTTTLPDLNP PIIFSNQIPN KSKGASQDLN 180 MLSFPVMQDQ HVHMSKFLQM HKMEGNGNMT HQQPSSSSSL YGSSSSPVSA LELLRTGVNV 240 SSRSGINSFM PSGPMMDSSN NVMYTSSGFP TMVDYKTSNL SFSTDHQGLE HNNNNNNNNN 300 SSGDAHSDHH QGRVLFPFGD QMKELSSSIT QEVDHDDNQQ QKSHGNNNNN NSSPNNGYWS 360 GMFSTTGGGS SW

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDATKWTQGF QEMMNVKPME QIMIPNNNTH QSNTTSSARP NTVLTSSGGV SAAGAIVSTG  60
VSNSNNTSVV VERKSRPQEK INCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGS  120
LRNVPVGGSS RKNKRSSSSN LLQTTPSSLG LTTTLPDLNP PIIFSNQIPN KSKGASQDLN  180
MLSFPVMQDQ HVHMSKFLQM HKMEGNGNMT HQQPSSSSSL YGSSSSPVSA LELLRTGVNV  240
SSRSGINSFM PSGPMMDSSN NVMYTSSGFP TMVDYKTSNL SFSTDHQGLE HNNNNNNNNN  300
SSGDAHSDHH QGRVLFPFGD QMKELSSSIT QEVDHDDNQQ QKSHGNNNNN NSSPNNGYWS  360
GMFSTTGGGS SW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142429.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142429.1	0.0	PREDICTED: dof zinc finger protein DOF2.5
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A397ZXX8	0.0	A0A397ZXX8_BRACM; Uncharacterized protein
STRING	Bra039272.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-149	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]