PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009142196.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 781aa MW: 86490.5 Da PI: 6.1022

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.1	7.5e-28	479	529	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e ++sl +l+++Fs+++kdAA+++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_009142196.1 479 ERNVSLRVLQQHFSGSLKDAARSIGVCPTTLKRICRQHGIMRWPSRKINKV 529 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.381	466	549	IPR003035	RWP-RK domain
Pfam	PF02042	5.7E-26	481	529	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.16E-22	669	764	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-22	678	759	No hit	No description
SMART	SM00666	5.5E-22	680	762	IPR000270	PB1 domain
PROSITE profile	PS51745	19.962	680	762	IPR000270	PB1 domain
CDD	cd06407	8.91E-33	681	761	No hit	No description
Pfam	PF00564	3.2E-17	681	761	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MEQHPFASRE NGFGYQEHMD GLTIGSGVWS FISDDMLNSS PTSELMNFNS FPTWCNIPFD 60 TDMLFSQYGQ EMSSRSHHHS FDIDELSGKR RSVLNCTIPR SLSHSLDEKM LKALSLFMQF 120 SGSGDGVLAQ VWTPVKTGDQ NMLSTCGQAY LLDPRLSQYR EVSRKFTFAS KPNQSSYPGL 180 PGRVFISGVR EWTPNVMYYK KDEYLRVKHA IDNEVRGSIA IPILEASGAS CCAVMELVTS 240 DEKLSFDVEL DSVCRALQAV DLRTSVVPRP QYLSSNQRDA LAEIQDVLRA LCHAHKLPLA 300 LTWIPNSGVL CIEETACYVN DMDMEGFVHA CLDHPLREKE GIVGKAFVSN QPSFSSDVKA 360 YDISEYPLVH HARKHGLNAA VALKLRSTYT GEDDYILELF LPLSLKGSLE QQLLLDSLEG 420 TLQRVCRTLR TVSDVEATSS TPSIFSDKSS DKDSTGSQGT CEQDMSKART AERTKGATER 480 NVSLRVLQQH FSGSLKDAAR SIGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQTVL 540 DSVHGIEGGL RFDSATGEFV AVCSSNGNNA HVMAEDASCE FLKPESVDNT IKLEDDIITN 600 GSFMEVNASD QPCALKAEQS GFNGSSQEIA SGNIIEPNRS MSDSSHGSGA VMLRSSSPSM 660 DDRNQRRAHK SNSSESGSAT LTVKATYRED TTRFKFDPSV GCLQLYKEVG KRFRLQEGLF 720 QLKYFDDEEE WVMLVTDSDL QECLEMLVGM KKQTVKFLVR DLPAARIGSS AGSNGYLGAG 780 L

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MEQHPFASRE NGFGYQEHMD GLTIGSGVWS FISDDMLNSS PTSELMNFNS FPTWCNIPFD  60
TDMLFSQYGQ EMSSRSHHHS FDIDELSGKR RSVLNCTIPR SLSHSLDEKM LKALSLFMQF  120
SGSGDGVLAQ VWTPVKTGDQ NMLSTCGQAY LLDPRLSQYR EVSRKFTFAS KPNQSSYPGL  180
PGRVFISGVR EWTPNVMYYK KDEYLRVKHA IDNEVRGSIA IPILEASGAS CCAVMELVTS  240
DEKLSFDVEL DSVCRALQAV DLRTSVVPRP QYLSSNQRDA LAEIQDVLRA LCHAHKLPLA  300
LTWIPNSGVL CIEETACYVN DMDMEGFVHA CLDHPLREKE GIVGKAFVSN QPSFSSDVKA  360
YDISEYPLVH HARKHGLNAA VALKLRSTYT GEDDYILELF LPLSLKGSLE QQLLLDSLEG  420
TLQRVCRTLR TVSDVEATSS TPSIFSDKSS DKDSTGSQGT CEQDMSKART AERTKGATER  480
NVSLRVLQQH FSGSLKDAAR SIGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQTVL  540
DSVHGIEGGL RFDSATGEFV AVCSSNGNNA HVMAEDASCE FLKPESVDNT IKLEDDIITN  600
GSFMEVNASD QPCALKAEQS GFNGSSQEIA SGNIIEPNRS MSDSSHGSGA VMLRSSSPSM  660
DDRNQRRAHK SNSSESGSAT LTVKATYRED TTRFKFDPSV GCLQLYKEVG KRFRLQEGLF  720
QLKYFDDEEE WVMLVTDSDL QECLEMLVGM KKQTVKFLVR DLPAARIGSS AGSNGYLGAG  780
L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142196.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142196.1	0.0	PREDICTED: protein NLP8-like isoform X1
Refseq	XP_009142197.1	0.0	PREDICTED: protein NLP8-like isoform X1
Refseq	XP_009142198.1	0.0	PREDICTED: protein NLP8-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M4F9E8	0.0	M4F9E8_BRARP; Uncharacterized protein
STRING	Bra037711.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]