PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142061.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 212aa    MW: 23999.1 Da    PI: 9.34
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154971123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_009142061.1 49 YTCSFCRRDFRSAQALGGHMNVH 71
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-64675No hitNo description
PROSITE profilePS5015711.1364976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKRTHLASFS SKNKTQEDQE GDTSGNDRVI MNLYNSYEAG LIPWPPKNYT CSFCRRDFRS  60
AQALGGHMNV HRRDRAKLRQ IPSWLFEPHQ QHVPVGNPNP NFGSSSPLTM PAHLDPSLTN  120
QISKTTTFSS DRFDLLDNTS HGGLMKEREK NKSNVCSREL KKSAIDSSCH AAKCEISRGE  180
MNKKHGFTRL ELGMDLRNPN QVLDLELRLG CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124471229superman protein
2l1o_A2e-124471229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|Ref.4}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142059.11e-159PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_009142060.11e-159PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_009142061.11e-159PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_013747415.11e-159zinc finger protein 11-like
RefseqXP_022574168.11e-159zinc finger protein 11-like
SwissprotQ9SLB81e-107ZFP11_ARATH; Zinc finger protein 11
TrEMBLA0A397ZR601e-158A0A397ZR60_BRACM; Uncharacterized protein
TrEMBLM4DK501e-158M4DK50_BRARP; Uncharacterized protein
STRINGBra016878.1-P1e-159(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-110zinc finger protein 11