PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141878.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 418aa    MW: 47167.6 Da    PI: 6.5652
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.6e-3293146255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  XP_009141878.1  93 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 146
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-3089147IPR009057Homeodomain-like
PROSITE profilePS5129414.02589149IPR017930Myb domain
SuperFamilySSF466895.73E-1690147IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-2493148IPR006447Myb domain, plants
PfamPF002491.0E-994145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MTPSSQSSEN SKTCPSNNFK ATTTKEDNDK DEEEEEEEEE EEEEEDEEER SADQSPSSNS  60
YVEESGSQHH HNNNDQIKKN GGSVRPYNRS KTPRLRWTPE LHLCFLQAVE RLGGPDRATP  120
KLVLQLMNVK GLSIAHVKSH LQMYRSKKID DLNQGDQGFS FEHGAGYTYN LSQPPMLQSF  180
DQGPSTSLGR YGGGSWIDHR RQVYRSPWRG LTARDNTRTR QTLFSSQLGE RFHGVSNSIL  240
DDKNKTISFR TNSREAAHAS NGIGEAVPRS HRSFLEGMKT FNKSWGQSFP SNPNPSMPSK  300
PQDHTAVTLN FHQSDNPRVG EETENDLKRK RLLLSGDYNK SNPDLDLSLS LKVPPTHNNL  360
GECLLEEGEK EHEDSKRLSL SLSSSSLSQH GRAIRKEDQN DHKKRKISVL ASPLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1794148357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1794148357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1794148357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1794148357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141878.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325720.0AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141878.10.0PREDICTED: serine/threonine-protein kinase pakF-like isoform X1
TrEMBLA0A397ZQR00.0A0A397ZQR0_BRACM; Uncharacterized protein
STRINGBo4g188940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein