PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141720.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 294aa    MW: 32855.4 Da    PI: 5.0696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48.1e-092974346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + + ++   +W ++a++++ g+t  +++  ++ 
   XP_009141720.1 29 KWTAEENKKFENALAFYDKDtpdRWFKVAAMLP-GKTVGDVIKQYRE 74
                     8********************************.******9999986 PP
2Myb_DNA-binding48.61.9e-15137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
   XP_009141720.1 137 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 181
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-42375IPR009057Homeodomain-like
PROSITE profilePS512939.6222580IPR017884SANT domain
SMARTSM007173.8E-102678IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-112882IPR009057Homeodomain-like
CDDcd001674.07E-82975No hitNo description
PfamPF002492.7E-72974IPR001005SANT/Myb domain
PROSITE profilePS5129421.845130186IPR017930Myb domain
SuperFamilySSF466891.66E-17132185IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-18133185IPR006447Myb domain, plants
SMARTSM007178.7E-14134184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-13134181IPR009057Homeodomain-like
CDDcd001671.48E-11137182No hitNo description
PfamPF002497.6E-13137181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNIGIEVMSP ATYLETSPNW LFQENRETKW TAEENKKFEN ALAFYDKDTP DRWFKVAAML  60
PGKTVGDVIK QYRELEEDVS DIEAGLIPIP GYASDSFTLD WGGYDAGNMN GYYFAAVGGK  120
RGSAARAAEH ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN IARNFVTTRT PTQVASHAQK  180
YFIRQVNGGK DKRRSSIHDI TTVNIPDSFD AAAADTAITN APCSPPSLGG SQREGSGQWD  240
GQTINDETAG TFYNPNAFQE TLLGMSSTPY MAKLQEQSFL NASQFESYNA YLQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1630941175RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895100.0AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141719.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_009141720.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H79e-94DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM4DKV70.0M4DKV7_BRARP; Uncharacterized protein
STRINGBra017138.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.10.0MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]