PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141595.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 179aa    MW: 19275.5 Da    PI: 4.7495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-171464255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr+++++ +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  XP_009141595.1 14 LYKGVRQRRNSDKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 64
                    69******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.92E-281374No hitNo description
PfamPF008473.1E-111364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-271474IPR001471AP2/ERF domain
PROSITE profilePS5103220.891472IPR001471AP2/ERF domain
SMARTSM003806.5E-311478IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-191474IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MPGTSKENGG RHPLYKGVRQ RRNSDKWVSE IREPRKPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQTELN FPNSASSLPV PASMSPGDIQ AAAASAAAAF GAARDAIVRT NNTNASSSVE  120
RSNVNTNGYM DEDLIFDMPN VLMNMAEGML LSPPRQSIFD AASDADGYTG GDDYLWNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12974974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141595.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069191e-104AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608671e-104AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026851e-104CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466041e-104DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530451e-104DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141595.11e-129PREDICTED: ethylene-responsive transcription factor ERF024-like
RefseqXP_013691481.11e-129ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-90ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A078JYM01e-128A0A078JYM0_BRANA; BnaAnng34830D protein
TrEMBLA0A397ZWF91e-128A0A397ZWF9_BRACM; Uncharacterized protein
TrEMBLM4DL541e-128M4DL54_BRARP; Uncharacterized protein
STRINGBra017235.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-81ERF family protein