PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141581.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 378aa    MW: 43115.7 Da    PI: 4.2961
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57390.32.2e-2856150397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      ++ w+++De+++L  ++d++++t+ s  +d+ afy +vk+ i++++sk+ql++Kir+L k+f +++++ ++++ psf+ ++d+ if+ls +iW+
  XP_009141581.1  56 NKMNWTKDDELIILGSIVDYEKETKLSHRSDWYAFYGYVKDFIEAEFSKKQLTDKIRNLNKRFLGNKARCDDEEGPSFTDTEDDIIFKLSVIIWD 150
                     5799******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.1E-2258150IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVLGKRTREH STDSNDKPIS SSPLRKMQED DVSGVESMLR RRKQPKTTPV SSSSNNKMNW  60
TKDDELIILG SIVDYEKETK LSHRSDWYAF YGYVKDFIEA EFSKKQLTDK IRNLNKRFLG  120
NKARCDDEEG PSFTDTEDDI IFKLSVIIWD STNETVCDSD ENVDQGKVDA PCVEHEKVSE  180
SNMDQAKDVP CVEHERVDEN IEQAKDVPCV EHEPVDENMD PAKVDLPCVE DERVDKNVDQ  240
GKVLDLDKDA PAVEHEPTNE NMDLDQEKDA LTDKDNNEED GVDEFCAMKD ALADKEKSEE  300
DSADEYCALK DALEETTFFQ SIGKYQQKAL LQNLKNLRGP RRKELADELK DLLDEEMKVR  360
GKKLSLSAKL ASAWEESC
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of rosette leaves, in primary and secondary roots and at the base of flowers and siliques. {ECO:0000269|PubMed:18162594}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141581.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141581.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X4
SwissprotQ9SJM46e-82STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLM4DL630.0M4DL63_BRARP; Uncharacterized protein
STRINGBra017244.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.12e-62DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]