PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009141461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 28198.9 Da PI: 7.416 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.1 | 3.2e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+ rqvtfskRrng++KK ELSvLCda + +i+fs+tgkl y+s XP_009141461.1 9 KKIENKTSRQVTFSKRRNGLIKKTRELSVLCDAHIGLIVFSTTGKLTQYCS 59 68***********************************************96 PP | |||||||
2 | K-box | 42 | 3.9e-15 | 87 | 161 | 15 | 94 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 l++e++ L++e+ +L+ +R + G dL s+ eL+ LeqqLe+s++k+R++K++l +l +k+++l+++n+++ XP_009141461.1 87 DDLRHEIEILRRETCKLELRLRPYHGHDLASIPPHELEGLEQQLEHSVRKVRERKQQL-----GNLSRKKRMLEDDNNNM 161 57899**************************************************865.....66777777777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.445 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.82E-42 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-30 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.5E-15 | 85 | 165 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.77 | 86 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIEIKK IENKTSRQVT FSKRRNGLIK KTRELSVLCD AHIGLIVFST TGKLTQYCSE 60 HSNMPQLIDR YLTKEGLQLP DLNDDRDDLR HEIEILRRET CKLELRLRPY HGHDLASIPP 120 HELEGLEQQL EHSVRKVRER KQQLGNLSRK KRMLEDDNNN MYRWLHDEHR TGVEFQQAGI 180 ETKPMEYQQF LEQVQYYNDH HQQQSSVLQL PTLPSEIDLS YHLQLAQPNL QNDPTTKVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-17 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 4e-17 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 4e-17 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 4e-17 | 1 | 71 | 1 | 69 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during seed development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in buds, flowers and immature seeds, but not in roots, stems, leaves, seedlings or siliques valves. Expression in seed coat is confined to the endothelium layer. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the developmental regulation of the endothelium and in the accumulation of proanthocyanidins (PAs) or condensed tannins which give the seed its brown pigmentation after oxidation (PubMed:12368498, PubMed:16080001). Necessary for the normal activation of the BANYULS promoter in the endothelium body (PubMed:12368498). Is required, together with AGL11/STK for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). Interacts genetically with AGL1/SHP1 and AGL5/SHP2 in a partially antagonistic manner and represses AGL1/SHP1, AGL5/SHP2, and AGL8/FUL during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). Mediates the crosstalk between endothelium and nucellus to ensure proper seed formation. Functions redundantly with AGL63/GOA to repress nucellus growth and promote its degeneration. Represses the negative regulator of autophagy and programmed cell death HVA22D in the proximal nucellus (PubMed:27233529). Binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:16080001). {ECO:0000269|PubMed:12368498, ECO:0000269|PubMed:16080001, ECO:0000269|PubMed:22176531, ECO:0000269|PubMed:27233529, ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009141461.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM449989 | 0.0 | HM449989.1 Brassica napus cultivar DH12075 MADS-box DNA-binding domain transcription factor (TT16.4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141461.1 | 1e-177 | PREDICTED: protein TRANSPARENT TESTA 16-like isoform X3 | ||||
Refseq | XP_022572833.1 | 1e-177 | protein TRANSPARENT TESTA 16 isoform X3 | ||||
Swissprot | Q8RYD9 | 1e-126 | TT16_ARATH; Protein TRANSPARENT TESTA 16 | ||||
TrEMBL | M4ECJ7 | 1e-176 | M4ECJ7_BRARP; Uncharacterized protein | ||||
STRING | Bra026507.1-P | 1e-177 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.1 | 1e-116 | MIKC_MADS family protein |