PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141338.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 217aa    MW: 24241.1 Da    PI: 9.2388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-2071120356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+++AeIrdp   + + +r++lg+f taeeAa a+++a+ +++g+
  XP_009141338.1  71 YRGVRQRP-WGKYAAEIRDP---N-KaARVWLGTFNTAEEAALAYDKAAFEFRGH 120
                     9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3270128IPR001471AP2/ERF domain
PROSITE profilePS5103223.72370127IPR001471AP2/ERF domain
CDDcd000184.05E-3470129No hitNo description
SMARTSM003809.5E-3770133IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2270128IPR016177DNA-binding domain
PfamPF008475.6E-1470120IPR001471AP2/ERF domain
PRINTSPR003672.7E-117182IPR001471AP2/ERF domain
PRINTSPR003672.7E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MMPSGKRPLS PESMARKREE KEDLYSCTTL SESDVSAFVS ELTDQPTPPS MDSSSSSLTP  60
GEQRKSRQRN YRGVRQRPWG KYAAEIRDPN KAARVWLGTF NTAEEAALAY DKAAFEFRGH  120
KAKLNFPEHI LINSSTHRYP STATSHDPII VTPVPPVAPD ILLDQYGKYL SENSYSSTAN  180
LSMTISASSS SLSQQENIPK LEDSESVKNM SIHKRRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2669127160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-2666127163ATERF1
3gcc_A7e-2666127163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141338.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892920.0AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141338.11e-160PREDICTED: ethylene-responsive transcription factor ERF112-like
RefseqXP_013747263.11e-160ethylene-responsive transcription factor ERF112-like
SwissprotP930078e-91EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLM4DZC41e-158M4DZC4_BRARP; Uncharacterized protein
STRINGBra021871.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-71ERF family protein