PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141219.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 728aa    MW: 81095.9 Da    PI: 6.5926
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-2072127156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++tk+q++eLe++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  XP_009141219.1  72 RKRYHRHTKHQIQELENFFKECPHPDDTQRKELSRQLGLDHHQIKFWFQNKRTQIK 127
                     789999**********************************************9988 PP
2START161.46.9e-512554742206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     lae a++el+++a ++ep+W   +      +n  e++++f  + +      ++ea++a+ + +m++ + v++l+d++  W++++a    +a+ ++
  XP_009141219.1 255 LAELAMKELMAMARLDEPLWDIGAngtsLALNLNEYTRIFRNGLGpilngLRTEASKATSIAFMNHLDIVQSLMDVN-LWSNMFArmvaRAMSHD 348
                     77889***************9999888778999*******76665********************************.******99999999999 PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     ++ +g      ga +lm+ae+q+lsp+v+ R+ +fvR+++q+g+g w++vdvS+d+  ++ e     +++++pSg+li++ +ng +kvtwvehv+
  XP_009141219.1 349 ALLTGvqgnfdGAFHLMTAEYQVLSPVVStRECYFVRHCKQQGDGIWAVVDVSIDHLFPNLE----LKCRRRPSGCLIQQIENGFCKVTWVEHVE 439
                     99999*****************************************************9997....99999************************ PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h l++sl++sg+a  a +wv+tl+rqce+
  XP_009141219.1 440 VDDREVHPLYKSLISSGQALSAERWVETLERQCER 474
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-2250127IPR009057Homeodomain-like
SuperFamilySSF466893.22E-2058130IPR009057Homeodomain-like
PROSITE profilePS5007117.10369129IPR001356Homeobox domain
SMARTSM003891.1E-1870133IPR001356Homeobox domain
CDDcd000865.56E-1972130No hitNo description
PfamPF000465.5E-1872127IPR001356Homeobox domain
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PROSITE profilePS5084837.958245477IPR002913START domain
SuperFamilySSF559611.96E-28248476No hitNo description
CDDcd088758.62E-101249473No hitNo description
SMARTSM002342.0E-39254474IPR002913START domain
PfamPF018523.8E-43255474IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-4360443IPR023393START-like domain
SuperFamilySSF559613.67E-13499690No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MSQPNMVPVE MNNNVGDGNN NNNNNNGNNI TTTNNDMNGG IVLGDEEIDS ANTSENQEDG  60
SDHQDPARPS KRKRYHRHTK HQIQELENFF KECPHPDDTQ RKELSRQLGL DHHQIKFWFQ  120
NKRTQIKNHQ ERHENSQLRA ENDRLRAENH QCRASIAKAI CHRCGGKTAI GEMSFEEHHL  180
LLENTKLAEE IRQLSLVMPK CTGKPVMNYT LTPPVPARPL EEIASNRREV YGSIGNVPGS  240
ALRVKDGDKP LIIELAELAM KELMAMARLD EPLWDIGANG TSLALNLNEY TRIFRNGLGP  300
ILNGLRTEAS KATSIAFMNH LDIVQSLMDV NLWSNMFARM VARAMSHDAL LTGVQGNFDG  360
AFHLMTAEYQ VLSPVVSTRE CYFVRHCKQQ GDGIWAVVDV SIDHLFPNLE LKCRRRPSGC  420
LIQQIENGFC KVTWVEHVEV DDREVHPLYK SLISSGQALS AERWVETLER QCERLAYIMS  480
PNVPSIEPDG LIMITNNAKQ SLLKIAERMT RSFLSGVATS NGDIWFGLSG NGGNTVRAMT  540
RKSLNDPGRP VGVILYASTS FWLPVPPKTV FDFLRDANNR TNWDVITTGG EGLQLMSQIG  600
NGRDSRNCVS LLRTPNTSQK KMMMIQETST DPTASFVIYA PLDVTLTENV LMGGDPGNVS  660
LLPMGFAILP DGTAQPGREG GSLVSTAFQV LAEKDPSTML SFSSLATTEN LILTTANKIR  720
AYFSQQTV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141219.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513778.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018513779.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM4DZ320.0M4DZ32_BRARP; Uncharacterized protein
STRINGBra021779.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2