PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141155.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 667aa    MW: 73351.6 Da    PI: 7.0012
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094554921954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_009141155.1 455 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 492
                     664559******************************88 PP
2BELL122.12.4e-39313384172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  XP_009141155.1 313 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAAIPYTALAQKAMSRHFRCLKDAVAAQL 384
                     589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-78239382IPR006563POX domain
PfamPF075265.1E-52244381IPR006563POX domain
PROSITE profilePS5007112.568433496IPR001356Homeobox domain
SMARTSM003891.2E-9436500IPR001356Homeobox domain
CDDcd000863.92E-12436497No hitNo description
SuperFamilySSF466892.91E-17437503IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-29439502IPR009057Homeodomain-like
PfamPF059203.3E-18453492IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MSQDYHHQQH QGGFFSFSNG FNRSDSPNLT PEKQEHQRLL EMDEESSVAR SGIPVYEPAG  60
MLSEMFNFQR SSGGGGGGGG DFDHSQSFRS NRQLLEQQHH NIPAMNSAAG MQLFLPQQPP  120
STRSHHGSST LHMLLPNPSH HQGYPNTMSM HQLPHQQLTW QSSSDHHHNT QTDIGTVHVE  180
NSGGQGLSLS LSSSLEAAVK AEEYRKFYYG SNLSSHHQYN EVSNHFLSSP AAASSSSSIG  240
AINVLRNSRY TKAAQELLEE FCSVGRGFSK KNKPKNNSNP NTSGGDGSSS GGAGGSPSSA  300
GASKEHPPLS ASDRIEHQRR KVKLLTMLEE VDRRYNHYCE QMQMVVNSFD IVMGHGAAIP  360
YTALAQKAMS RHFRCLKDAV AAQLRQSCEL LGEKDAAGLS SSGLTKGDTP RLRLLEQSLR  420
QQRAFHQMGM MEQEAWRPQR GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN  480
QVSNWFINAR VRLWKPMVEE MYQQESKERE ERLEENEQED QETKNNSSND KSTKPNNNES  540
NFTAVRTTSQ TPTTAAQSAA TPPDAGHHRL RSAADINAYE NDPSSSSHSN AAAVVSSYGG  600
STAFSAIATC QQGVGGFADA DMDGDNNVIR FGTINPTGDV SLTLGLRHAG NIPDKNASFC  660
VRDFGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16442500563Homeobox protein Meis2
3k2a_B1e-16442500563Homeobox protein Meis2
4xrm_A1e-16442500563Homeobox protein Meis2
4xrm_B1e-16442500563Homeobox protein Meis2
4xrs_A9e-17442499158Homeobox protein Meis1
4xrs_B9e-17442499158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141155.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_009141221.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A398AHI50.0A0A398AHI5_BRACM; Uncharacterized protein
STRINGBo1g005330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]