PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140946.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 317aa MW: 34286.7 Da PI: 9.5528 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.3 | 1.7e-38 | 95 | 152 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 l+cprC+s+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk+ XP_009140946.1 95 GPLNCPRCNSANTKFCYFNNYNLTQPRHFCKACRRYWTQGGALRNVPVGGGCRRNKKA 152 5789***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-33 | 78 | 148 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-32 | 96 | 151 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.581 | 97 | 151 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 99 | 135 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MVFSSVSSFL DPPINWPQSA NSNNHPNHPH QLHLQETGNL VGGHQVHSHQ FPPQNPNPNH 60 NHVDTTADTT VDPAGFSGPA TERARLAKNS HPPEGPLNCP RCNSANTKFC YFNNYNLTQP 120 RHFCKACRRY WTQGGALRNV PVGGGCRRNK KAKPGNSKSS ASSQNKQSTS MVNASSPTTN 180 SNIQLRTNSQ LPFLPTLQNL TQLGGFFHGA NTSGPVMANN NNNESNIMTS LGSASHFAML 240 DRSMGLYSFP NEGNMVLSSS TASRVSQTAP VKMEETHVGN ISRPDSGLTS AGNQSNQYWP 300 GLSLPGSSSN DQQQHLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00281 | DAP | Transfer from AT2G28810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140946.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140946.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.2 isoform X3 | ||||
Swissprot | Q9ZV33 | 1e-157 | DOF22_ARATH; Dof zinc finger protein DOF2.2 | ||||
TrEMBL | A0A3P6CF12 | 0.0 | A0A3P6CF12_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F3L7 | 0.0 | M4F3L7_BRARP; Uncharacterized protein | ||||
STRING | Bra035667.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.1 | 1e-125 | Dof family protein |
Publications ? help Back to Top | |||
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