PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140946.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 317aa    MW: 34286.7 Da    PI: 9.5528
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.31.7e-3895152461
          zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                       l+cprC+s+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk+
  XP_009140946.1  95 GPLNCPRCNSANTKFCYFNNYNLTQPRHFCKACRRYWTQGGALRNVPVGGGCRRNKKA 152
                     5789***************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3378148IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3296151IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.58197151IPR003851Zinc finger, Dof-type
PROSITE patternPS01361099135IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVFSSVSSFL DPPINWPQSA NSNNHPNHPH QLHLQETGNL VGGHQVHSHQ FPPQNPNPNH  60
NHVDTTADTT VDPAGFSGPA TERARLAKNS HPPEGPLNCP RCNSANTKFC YFNNYNLTQP  120
RHFCKACRRY WTQGGALRNV PVGGGCRRNK KAKPGNSKSS ASSQNKQSTS MVNASSPTTN  180
SNIQLRTNSQ LPFLPTLQNL TQLGGFFHGA NTSGPVMANN NNNESNIMTS LGSASHFAML  240
DRSMGLYSFP NEGNMVLSSS TASRVSQTAP VKMEETHVGN ISRPDSGLTS AGNQSNQYWP  300
GLSLPGSSSN DQQQHLM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00281DAPTransfer from AT2G28810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140946.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140946.10.0PREDICTED: dof zinc finger protein DOF2.2 isoform X3
SwissprotQ9ZV331e-157DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBLA0A3P6CF120.0A0A3P6CF12_BRACM; Uncharacterized protein
TrEMBLM4F3L70.0M4F3L7_BRARP; Uncharacterized protein
STRINGBra035667.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.11e-125Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]