PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140945.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 327aa MW: 35020.4 Da PI: 9.5528

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140945.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.8e-38	78	135	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 l+cprC+s+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk+ XP_009140945.1 78 GPLNCPRCNSANTKFCYFNNYNLTQPRHFCKACRRYWTQGGALRNVPVGGGCRRNKKA 135 5789***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-33	61	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MSANSNNHPN HPHQLHLQET GNLVGGHQVH SHQFPPQNPN PNHNHVDTTA DTTVDPAGFS 60 GPATERARLA KNSHPPEGPL NCPRCNSANT KFCYFNNYNL TQPRHFCKAC RRYWTQGGAL 120 RNVPVGGGCR RNKKAKPGNS KSSASSQNKQ STSMVNASSP TTNSNIQLRT NSQLPFLPTL 180 QNLTQLGGIG LNLAAINGNS VGNGNTSSSF FNDLGFFHGA NTSGPVMANN NNNESNIMTS 240 LGSASHFAML DRSMGLYSFP NEGNMVLSSS TASRVSQTAP VKMEETHVGN ISRPDSGLTS 300 AGNQSNQYWP GLSLPGSSSN DQQQHLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140945.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140945.1	0.0	PREDICTED: dof zinc finger protein DOF2.2 isoform X2
Swissprot	Q9ZV33	1e-159	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	A0A3P6CF12	0.0	A0A3P6CF12_BRACM; Uncharacterized protein
TrEMBL	M4F3L7	0.0	M4F3L7_BRARP; Uncharacterized protein
STRING	Bra035667.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	1e-132	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]