PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140908.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 286aa    MW: 31314.7 Da    PI: 8.5596
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.34.1e-3947106463
          zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     +a+kcprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+nk+sss
  XP_009140908.1  47 EAQKCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 106
                     689*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.1E-3248103IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-234898IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0549103IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105187IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDPQQEMSNE TLETILVSST KGSNYKNIKK MEEEMKKKQG KGELEGEAQK CPRCESPNTK  60
FCYYNNYSLS QPRYFCKSCR RYWTKGGTLR NVPVGGGCRR NKRSSSSFSK NINKPINFHN  120
DPLHNPFTGM PSSFGYDSID LNLAFAALHK HPPSQVTPSF GFGGDVSIYG NSTNTHSGVL  180
GNGLNFGEQN GNFNGGSLWY GFMSGNESEN KTTSALGIPL EGNETKQENV NNNNNILGNP  240
SKVLLGFPWQ ITGNSAGGVP ETDPGRESWN GLVSSWSSGL LNTPLV
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}.
UniprotTISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892990.0AC189299.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028K05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140908.10.0PREDICTED: dof zinc finger protein DOF2.1
SwissprotQ8LE431e-120DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLA0A397ZUY80.0A0A397ZUY8_BRACM; Uncharacterized protein
STRINGBra035696.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-104Dof family protein