PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140854.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 216aa    MW: 24316.9 Da    PI: 10.2602
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.3e-1288127144
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                     +++kGVr ++ +g+W AeI+dps+   + r +lg f tae+Aa+
  XP_009140854.1  88 KKHKGVRKKP-SGKWSAEIWDPSS---KVRRWLGVFPTAEMAAR 127
                     589****999.7*********854...5999************8 PP
2AP252.71.1e-16147197155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGVr ++ +g+W AeI+dps    + r +lg f tae+Aa+a+++a+ ++ g
  XP_009140854.1 147 KKYKGVRKKP-SGKWSAEIWDPSL---KVRRWLGMFPTAEMAARAYDEAAAEFIG 197
                     59*****999.7*********943...5999*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.30389146IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1189127IPR016177DNA-binding domain
SMARTSM003808.1E-1189141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1489127IPR001471AP2/ERF domain
PfamPF008471.1E-489129IPR001471AP2/ERF domain
CDDcd000183.27E-1592127No hitNo description
CDDcd000182.48E-14147187No hitNo description
PROSITE profilePS5103219.704148209IPR001471AP2/ERF domain
SMARTSM003807.3E-26148212IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-16148199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-21148198IPR001471AP2/ERF domain
PfamPF008474.6E-9148197IPR001471AP2/ERF domain
PRINTSPR003679.6E-7149160IPR001471AP2/ERF domain
PRINTSPR003679.6E-7171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDNSYPFALG PPASSCFSYL TRDQEHQIMV SALRQVISKV GRDTSSPNGI TSGVDLPLPD  60
AGPCPLCGIT GCYGCAFQQR DEEIKKEKKH KGVRKKPSGK WSAEIWDPSS KVRRWLGVFP  120
TAEMAARDAG CYGCAFQRKD EETKREKKYK GVRKKPSGKW SAEIWDPSLK VRRWLGMFPT  180
AEMAARAYDE AAAEFIGRIS ARRGQMNGHV IKRWRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013645777.23e-83ethylene-responsive transcription factor ERF120-like
SwissprotQ9FGC92e-51EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLM4EZK61e-105M4EZK6_BRARP; Uncharacterized protein
STRINGBra034249.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.11e-41ERF family protein