PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140851.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 287aa MW: 30830.3 Da PI: 7.7985

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H XP_009140851.1 118 YECKTCSRTFSSFQALGGHRASH 140 99**********99999998887 PP
2	zf-C2H2	13.3	0.00024	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_009140851.1 194 HECSICGSEFTSGQALGGHMRRH 216 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.8E-12	117	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.77E-8	117	140	No hit	No description
PROSITE profile	PS50157	10.575	118	145	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	118	140	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	120	140	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.77E-8	189	216	No hit	No description
Gene3D	G3DSA:3.30.160.60	0.001	192	216	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.6E-11	193	217	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	194	216	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.868	194	221	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MMSQDHVGSD QTQIIKGKRT KRQRSSSSTF LVAAAAATTN TSSSSSAGDG GGGRAVSDEY 60 NSAVSSPVTT TDCTEEEEDM AICLIMLARG AALSPDLKNS RKADKTLSSA ENSSFFVYEC 120 KTCSRTFSSF QALGGHRASH KKPRVSIEAK TKLPLMQAKS SGSEEGQKSN FKVFGSSLAS 180 LSSNIIISKA NKVHECSICG SEFTSGQALG GHMRRHRTAT TAVIPVSTTE VSRNSTEEET 240 ENLSSYIEQR KYLPLDLNLP APEDDLRESK FQGIVFSTTP ALIDCHY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140851.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005851	2e-41	AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBank	AC006202	2e-41	AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBank	AK175493	2e-41	AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
GenBank	AK229812	2e-41	AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBank	CP002685	2e-41	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	X98678	2e-41	X98678.1 A.thaliana mRNA for ZAT5 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140851.1	0.0	PREDICTED: zinc finger protein ZAT5-like isoform X1
Refseq	XP_018514147.1	0.0	PREDICTED: zinc finger protein ZAT5-like isoform X2
Swissprot	Q681X4	1e-147	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A397ZUX5	0.0	A0A397ZUX5_BRACM; Uncharacterized protein
STRING	Bo4g165160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-111	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]