PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140578.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 185aa MW: 21337 Da PI: 10.9942

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.8	4e-18	93	184	6	99
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ ++ ++rl lp +f++ +g++k++ ++t++d+ g +W+ l ++k+ +r + l+++Wk+F++ n++k g+++v++l++ +++ +v+ +++k XP_009140578.1 93 VTLTATPTCRLNLPLEFTKGNGINKAR--KITMRDRFGIKWSTVLLMNKNERRtMSLGRNWKGFCEFNDVKMGESFVLELVW-ENTVPVLNFCSK 184 56677889************99776..7***********99777777699************************.777799999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-17	88	184	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.069	88	184	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-22	92	185	IPR003340	B3 DNA binding domain
CDD	cd10017	1.77E-16	92	183	No hit	No description
Pfam	PF02362	7.2E-17	93	184	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.87E-19	94	184	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MLLTRRNHMF TFKLVQNEET PVIQLLPLNS EDLPKVVKSL AMSVTQGKLL KKILGVETNR 60 NDTSQSKEAI KKRTRSKATI KEENITTSQN RFVTLTATPT CRLNLPLEFT KGNGINKARK 120 ITMRDRFGIK WSTVLLMNKN ERRTMSLGRN WKGFCEFNDV KMGESFVLEL VWENTVPVLN 180 FCSKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140578.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140578.1	1e-132	PREDICTED: B3 domain-containing protein REM10-like
Swissprot	P0DH85	2e-48	REM10_ARATH; B3 domain-containing protein REM10
TrEMBL	A0A397ZL37	2e-99	A0A397ZL37_BRACM; Uncharacterized protein (Fragment)
STRING	Bra032074.1-P	3e-91	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	1e-50	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]