PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140572.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 373aa    MW: 42711.1 Da    PI: 9.8254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.4e-16695198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ffk l     + s+ l +p  f+++h +g +e + t +l++ +s  +W+vk+      ++  lt+GWkeF+ a++L++gD+v+F+ ++++ f  +v+
  XP_009140572.1  6 FFKPL--LPGFYSH-LKIPVAFFSKHiEGRNEHKNTAKLRSdTSEITWKVKI-----EDGLRLTDGWKEFALAHDLRVGDIVIFRQEKDMAF--HVT 92
                    56666..5566666.99**********556667779999997888*******.....55678***********************7776777..998 PP

                    EE- CS
              B3 96 vfr 98
                    +f 
  XP_009140572.1 93 LFG 95
                    875 PP
2B371.41.2e-22143229593
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      +++++l+ ++l++pk fa+++g+++ +s +++l++e+g sW+++l+ + + g++++t+GW++F++ ng ++g f++Fkl++r +++lv
  XP_009140572.1 143 NVTPSSLRYDMLYIPKIFARANGLET-RSGEIVLMNEKGTSWTLNLKQKSSCGTMYITRGWRRFCRVNGHRAGSFFTFKLIQR-GGTLV 229
                     6789999***************9996.556****************87777777***************************96.44343 PP
3B363.43.5e-20276372199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ +++++  +++ l+lp +f+++h++++e+   +tl d++g +W+  l+ +k+s+++ l +GWkeF kan ++ g++++ kl+++ ++++v+k
  XP_009140572.1 276 FVTLTLKPYEVEKSTLYLPVQFTRRHSINEET--RMTLLDKNGVKWSTDLRSEKRSDKIRLVGGWKEFFKANCVEMGESIIVKLIWDGDTSCVLK 368
                     667778899999999***********999655..7*******************************************************9**** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_009140572.1 369 FCSK 372
                     *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.421397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-233109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-203103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-15594No hitNo description
SMARTSM010195.3E-21697IPR003340B3 DNA binding domain
PfamPF023621.1E-101694IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-21136230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-19138232IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-19139231No hitNo description
PROSITE profilePS5086315.298139236IPR003340B3 DNA binding domain
SMARTSM010194.8E-27140236IPR003340B3 DNA binding domain
PfamPF023629.8E-22142229IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-19270372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-19273365IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-16275370No hitNo description
SMARTSM010197.8E-25276373IPR003340B3 DNA binding domain
PfamPF023625.5E-19276372IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733276373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MANQHFFKPL LPGFYSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLRL  60
TDGWKEFALA HDLRVGDIVI FRQEKDMAFH VTLFGPSCCE IQYGACLDDK NKLVKIQSKK  120
EVKKNNKREA ESCTLDPSSY VVNVTPSSLR YDMLYIPKIF ARANGLETRS GEIVLMNEKG  180
TSWTLNLKQK SSCGTMYITR GWRRFCRVNG HRAGSFFTFK LIQRGGTLVL RKSPSSTESE  240
DSSEGDEIEP LSTESKSFKK TSSMWKASSS PFQNLFVTLT LKPYEVEKST LYLPVQFTRR  300
HSINEETRMT LLDKNGVKWS TDLRSEKRSD KIRLVGGWKE FFKANCVEMG ESIIVKLIWD  360
GDTSCVLKFC SKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127VKKNNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140572.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140572.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230761e-116REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLM4ETE70.0M4ETE7_BRARP; Uncharacterized protein
STRINGBra032078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-115B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]