PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140571.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 512aa    MW: 58559.1 Da    PI: 9.6089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-14895197
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    ffk l     + s+ l++p  f+ ++  g  ++e+ t +l++  s  +Wevk+  + ++    lt+GWkeF+ a++L+ gD+++F+ ++++ f  +v
  XP_009140571.1  8 FFKPL--LPGFHSH-LTIPVAFFLKYieG--TNEHHTAKLRSdASMITWEVKI--EDGK---KLTEGWKEFALAHDLRIGDILIFRQEKDMAF--HV 92
                    66666..5667777.***********743..346668999986888*******..4443...39**********************7776777..77 PP

                    EEE CS
              B3 95 kvf 97
                    +++
  XP_009140571.1 93 TLL 95
                    665 PP
2B368.31.1e-21138232298
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fk+ + +++l+ + l lpk+f++++g+++ ++ +++l++e+gr W++ l  +k sg++++++GW++F+ an+Lk+g + +Fkl++ s++++v+ +
  XP_009140571.1 138 FKTNIWPSSLRYDTLNLPKSFVRANGLETSCGGEIVLMNEKGRPWTLVL-KQKLSGTTYIRRGWRRFCIANRLKTGGVYTFKLIQ-SGRTPVLLL 230
                     6888889999***************************************.5788888***************************9.788788877 PP

                     E- CS
              B3  97 fr 98 
                      +
  XP_009140571.1 231 SS 232
                     66 PP
3B367.91.4e-21269357797
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +  +l+ + l lp kf +e+g++ +++ +++l++e+grsW+++l+ + + g++++t+GW++F++angL++g + +Fkl++ ++++l +++ 
  XP_009140571.1 269 SRATLRYDTLGLPMKFSRENGLEARCG-EIVLMNEKGRSWKLNLKRKISCGTMYITQGWRSFCSANGLRAGSSSTFKLIK-RGGTLALRLS 357
                     556778899************998887.****************98999999**************************99.5555666655 PP
4B3512.7e-16419511699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ +l++  l lp +f++ hg+++e  ++++l d++g +W+  l+  + + +++ l +GW+eF kan +k+g+++++kl+++ ++++v+k+f+k
  XP_009140571.1 419 LRPFNLEKYSLFLPLRFTRWHGINEE--TKMRLLDKNGVKWSTDLRSeKTNIDKIRLVGGWQEFFKANCVKTGESIMLKLIWEGDKRCVLKFFSK 511
                     55666777889**********99954..58***************8844444559****************************9999****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.871598IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-186105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-218111IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-14895No hitNo description
SMARTSM010191.0E-21898IPR003340B3 DNA binding domain
PfamPF023621.2E-91691IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20129232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-20132231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-15135230No hitNo description
PROSITE profilePS5086315.129137233IPR003340B3 DNA binding domain
PfamPF023623.2E-20138232IPR003340B3 DNA binding domain
SMARTSM010197.5E-27138234IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-19256349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-16262356IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.059263360IPR003340B3 DNA binding domain
SMARTSM010198.2E-28264360IPR003340B3 DNA binding domain
PfamPF023625.7E-20269357IPR003340B3 DNA binding domain
CDDcd100176.01E-19272356No hitNo description
Gene3DG3DSA:2.40.330.101.3E-17406505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-18409504IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-12413508No hitNo description
PfamPF023624.9E-15414511IPR003340B3 DNA binding domain
SMARTSM010196.8E-18414512IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169414512IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MRMANKGFFK PLLPGFHSHL TIPVAFFLKY IEGTNEHHTA KLRSDASMIT WEVKIEDGKK  60
LTEGWKEFAL AHDLRIGDIL IFRQEKDMAF HVTLLGPSGC EIQYESCSEE ENNLGKIPKK  120
MNSKREAESS SSLDPSCFKT NIWPSSLRYD TLNLPKSFVR ANGLETSCGG EIVLMNEKGR  180
PWTLVLKQKL SGTTYIRRGW RRFCIANRLK TGGVYTFKLI QSGRTPVLLL SSKESESESE  240
SEERNFEKIQ RKKAESSSLD PSCFVANISR ATLRYDTLGL PMKFSRENGL EARCGEIVLM  300
NEKGRSWKLN LKRKISCGTM YITQGWRSFC SANGLRAGSS STFKLIKRGG TLALRLSSKE  360
TEEEEEEDCS LKAIEVESLS TEPESDEESS QDDEKIKKHR STWKASSSQS QNRFVTLTLR  420
PFNLEKYSLF LPLRFTRWHG INEETKMRLL DKNGVKWSTD LRSEKTNIDK IRLVGGWQEF  480
FKANCVKTGE SIMLKLIWEG DKRCVLKFFS KV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140571.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLM4ETE60.0M4ETE6_BRARP; Uncharacterized protein
STRINGBra032077.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein