PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 129aa MW: 15048.4 Da PI: 7.9294 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.3 | 2.2e-16 | 16 | 96 | 11 | 97 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ++ l +p f+++h +g + + t +l++ s +W+v++ + ++ r lt+GWkeF+ a++L++gD+v+F+ +++++f +v+++ XP_009140570.1 16 FHTH-LKIPVAFFSKHmEGRNDHKNTAKLRSeASEMTWKVNI--EDGR-R--LTEGWKEFALAHDLRVGDIVIFRQERDMSF--HVTLL 96 4455.99**********555556679*****55669******..4444.3..9**********************8777888..77765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.42E-20 | 5 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.28 | 5 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-24 | 5 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.45E-15 | 6 | 96 | No hit | No description |
SMART | SM01019 | 6.8E-23 | 8 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-12 | 18 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MRMANKHFFQ PLLPGFHTHL KIPVAFFSKH MEGRNDHKNT AKLRSEASEM TWKVNIEDGR 60 RLTEGWKEFA LAHDLRVGDI VIFRQERDMS FHVTLLGPSC CEIQYGSCID QDNNLGQFFV 120 FCLFQKLCV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022573891.1 | 3e-80 | B3 domain-containing protein REM14-like | ||||
Swissprot | Q8GYM4 | 6e-58 | REM14_ARATH; B3 domain-containing protein REM14 | ||||
TrEMBL | A0A397ZTS5 | 2e-80 | A0A397ZTS5_BRACM; Uncharacterized protein | ||||
STRING | Bo4g154830.1 | 2e-66 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 2e-60 | B3 family protein |