PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140492.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 645aa    MW: 71303.8 Da    PI: 7.138
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-094544911954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  XP_009140492.1 454 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 491
                     665569******************************88 PP
2BELL123.67.7e-40312383172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  XP_009140492.1 312 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 383
                     589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-83238381IPR006563POX domain
PfamPF075261.2E-51244380IPR006563POX domain
PROSITE profilePS5007112.86432495IPR001356Homeobox domain
SMARTSM003891.1E-9435499IPR001356Homeobox domain
CDDcd000862.08E-12435496No hitNo description
SuperFamilySSF466891.28E-17436502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28438501IPR009057Homeodomain-like
PfamPF059202.9E-18452491IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MGLATTTVPH HRHHHKTLDN SLDSMSQDYH HHQGIFSFSS GFHRPSSSHQ EEVEESAVSG  60
AQIPVYETAG MLSEMFTYPG GGNGGSGEIL DHSTKQLLEQ QNRHNNNNST LHMLLPNHHH  120
QGYGYPNEQQ FTWPSSSDHH QSQGDMIGTV HVEGGKGLSL SLSSSLEAAA AAAKAEEYRS  180
IYCAAVDGTS SSSNASVHHH QFNQLKTLLL DNSSSHQHQV MGHFGSSSSS PMAASSSIGG  240
IYTLRNSKYT KPAQELLEEF CSVGRGHHFK KNKLSRNNSN PNTSGCGGGG GGGGSSSTAG  300
AANDSPPLSP ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY  360
TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKESAGAAS SGLTKGETPR LRLLEQSLRQ  420
QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ  480
VSNWFINARV RLWKPMVEEM YQQEAKEREE EELGENKKED YQHQRRHQQT NNKDTKPNES  540
NFTLVQTITA QTPTTTMMTS TPHENDRSSL PPSTSVANAP SLGVSGAFTV STCQQDVSDF  600
HVEDGVIRFG TKQAGDVSLT LGLRHTGNMP DNKNPSFSVR DFGDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-16441498158Homeobox protein Meis1
4xrs_B7e-16441498158Homeobox protein Meis1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283294SGCGGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.36990.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140492.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528110.0AK352811.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-J15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140492.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A078HQR50.0A0A078HQR5_BRANA; BnaA04g13860D protein
TrEMBLA0A397ZML50.0A0A397ZML5_BRACM; Uncharacterized protein
STRINGBo4g151860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]